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https://github.com/armbrustlab/cytdiv

cytoDiv is a R function that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices express the organization and structure of a community, its richness in physiological and genetic variations. The equations used to calculate the indices are described in Li, W. 1997 Limnology & Oceanography 42, 874:880

https://github.com/armbrustlab/cytdiv

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 2 committers (100.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.0%) to scientific vocabulary

Keywords

flow-cytometry oceanography reproducible-research seaflow
Last synced: 5 months ago · JSON representation

Repository

cytoDiv is a R function that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices express the organization and structure of a community, its richness in physiological and genetic variations. The equations used to calculate the indices are described in Li, W. 1997 Limnology & Oceanography 42, 874:880

Basic Info
  • Host: GitHub
  • Owner: armbrustlab
  • License: mit
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 1.13 MB
Statistics
  • Stars: 2
  • Watchers: 5
  • Forks: 2
  • Open Issues: 1
  • Releases: 0
Topics
flow-cytometry oceanography reproducible-research seaflow
Created over 12 years ago · Last pushed almost 8 years ago
Metadata Files
Readme License

README.md

cytDiv

cytoDiv is a R function that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices express the organization and structure of a community, its richness in physiological and genetic variations. The equations used to calculate the indices are described in Li, W. 1997 Limnology & Oceanography 42, 874:880

Owner

  • Name: Armbrust Lab
  • Login: armbrustlab
  • Kind: organization
  • Location: Seattle, WA

Biological Oceanography Lab at the University of Washington

GitHub Events

Total
Last Year

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 11
  • Total Committers: 2
  • Avg Commits per committer: 5.5
  • Development Distribution Score (DDS): 0.182
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Francois Ribalet r****t@u****u 9
Sophie Clayton s****n@u****u 2
Committer Domains (Top 20 + Academic)
uw.edu: 2

Issues and Pull Requests

Last synced: about 2 years ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
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Dependencies

DESCRIPTION cran
  • R >= 3.0.0 depends