https://github.com/arnauqb/june
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 1 DOI reference(s) in README -
✓Academic publication links
Links to: medrxiv.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (13.4%) to scientific vocabulary
Last synced: 10 months ago
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Repository
Basic Info
- Host: GitHub
- Owner: arnauqb
- License: gpl-3.0
- Language: Python
- Default Branch: master
- Size: 171 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Fork of IDAS-Durham/JUNE
Created over 5 years ago
· Last pushed over 5 years ago
https://github.com/arnauqb/JUNE/blob/master/
 [](https://codecov.io/gh/idas-durham/june) # JUNE: open-source individual-based epidemiology simulation This is the offical repository of JUNE, named after [June Almeida](https://en.wikipedia.org/wiki/June_Almeida), who was the female Scottish virologist that first identified the coronavirus group of viruses. checkout the [release paper](https://www.medrxiv.org/content/10.1101/2020.12.15.20248246v1) for a physical description of the model. # Setup The easiest way to get JUNE up and running is to install the latest stable version, ``` pip install june ``` and download the data by running the command ``` scripts/get_june_data.sh ``` This will require a working installation of Openmpi or Intelmpi to compile ``mpi4py``. If you want to get the most up-to-date version of the code, then you can clone this repository, and install it using ``` pip install -e . ``` This should automatically install any requirements as well. You can then get the data using the same command as the pip version. # How to use the code Have a look at ``Notebooks/quickstart.ipynb`` for a gentle introduction to how JUNE works. You can also checkout some scripts in ``example_scripts``. The ``docs`` directory contains the source files and HTML outputs to display all information auto-generated from the `june` codebase docstrings, including auto-generated class and module diagrams. # Tests Run the tests with ``` cd test_june pytest ```
Owner
- Name: Arnau Quera-Bofarull
- Login: arnauqb
- Kind: user
- Location: Oxford
- Website: arnau.ai
- Repositories: 42
- Profile: https://github.com/arnauqb
Astrophysicist now doing research on agent-based modeling at Oxford.