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programming_formalisms_project_autumn_2024

Learners' project of the Programming Formalisms course of autumn 2024

https://github.com/programming-formalisms/programming_formalisms_project_autumn_2024

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
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    DOI references
  • ○
    Academic publication links
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.0%) to scientific vocabulary
Last synced: 9 months ago · JSON representation ·

Repository

Learners' project of the Programming Formalisms course of autumn 2024

Basic Info
  • Host: GitHub
  • Owner: programming-formalisms
  • License: gpl-3.0
  • Language: PowerShell
  • Default Branch: master
  • Size: 2.14 MB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 20
  • Releases: 5
Created over 1 year ago · Last pushed over 1 year ago
Metadata Files
Readme Contributing License Code of conduct Citation

README-EXT.md

Bacteria Simulation

To simulate bacterial movement in 2D space.

About

Learners' project of the Programming Formalisms course of autumn 2024. One way to model bacterial movement is the run and tumble model, where 'run' is going straight in a direction, and 'tumble' is picking a random direction. The 'run' lasts longer when a bacterium finds more and more nutrients (e.g. dissolved sugars), and lasts shorter when finding less and less nutrients. This model simulates bacteria doing the run and tumble to collect nutrient. Data will be vizialised regarding the bacteria lifespan.

Dependencies

Works for Windows 11, Linux and Mac

Installing

Download the program from: https://test.pypi.org/project/bacsim/1.0.1/

and install it using:

pip install -i https://test.pypi.org/simple/ bacsim==1.0.1

Executing program

First clone the repository on,

https://github.com/programming-formalisms/programming_formalisms_project_autumn_2024

Run the code with the following commands:

python main.py

Citation

Citation

Authors

Contributors names

Gustav Fabian Lloyd Pâmella

License

a relative link

Acknowledgments

Owner

  • Name: programming-formalisms
  • Login: programming-formalisms
  • Kind: organization

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
  - family-names: Testsson
    given-names: Test
    orcid: https://orcid.org/1234-5678-9101-1121
title: "Bacterial simulation"
version: 1.0.3
identifiers:
  - type: doi
    value: to be continued..
date-released: 2024-11-22

GitHub Events

Total
  • Create event: 41
  • Commit comment event: 1
  • Release event: 5
  • Issues event: 59
  • Delete event: 16
  • Issue comment event: 48
  • Push event: 239
  • Pull request review event: 7
  • Pull request event: 22
Last Year
  • Create event: 41
  • Commit comment event: 1
  • Release event: 5
  • Issues event: 59
  • Delete event: 16
  • Issue comment event: 48
  • Push event: 239
  • Pull request review event: 7
  • Pull request event: 22