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Open Source Science

https://github.com/aroneys/globdb_processing

Processing scripts for GlobDB (https://globdb.org)

https://github.com/aroneys/globdb_processing

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 1 committers (100.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Processing scripts for GlobDB (https://globdb.org)

Basic Info
  • Host: GitHub
  • Owner: AroneyS
  • Language: Python
  • Default Branch: master
  • Size: 16.6 KB
Statistics
  • Stars: 1
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created about 1 year ago · Last pushed about 1 year ago
Metadata Files
Readme

README.md

Globdb processing pipeline

bash conda activate globdb_processing

Run locally

bash snakemake \ --snakefile scripts/globdb_processing.smk \ --directory results/globdb_processing/20250402 \ --software-deployment-method conda --conda-prefix /mnt/weka/pkg/cmr/aroneys/envs_aqua \ --keep-going --rerun-triggers mtime --cores 32

Run with cluster submission

bash snakemake \ --snakefile scripts/globdb_processing.smk \ --directory results/globdb_processing/20250402 \ --software-deployment-method conda --conda-prefix /mnt/weka/pkg/cmr/aroneys/envs_aqua \ --profile aqua --retries 3 \ --keep-going --rerun-triggers mtime --cores 64 --local-cores 32

Owner

  • Name: Samuel Aroney
  • Login: AroneyS
  • Kind: user

GitHub Events

Total
  • Push event: 1
  • Create event: 1
Last Year
  • Push event: 1
  • Create event: 1

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 2
  • Total Committers: 1
  • Avg Commits per committer: 2.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 2
  • Committers: 1
  • Avg Commits per committer: 2.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
AroneyS s****y@q****u 2
Committer Domains (Top 20 + Academic)
qut.edu.au: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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