conodictor - conodictor v2.4.1

• Add missing code for --faa option

- Python
Published by Ebedthan over 1 year ago

conodictor - conodictor v2.4

• Major code refactoring of code and linting with ruff;
• Remove HMMER3 dependencies by using pyhmmer library;
• Fix #18;
• Various maintenance fixes.

- Python
Published by Ebedthan over 1 year ago

conodictor - conodictor v2.3.6

Temporary fix to #18

- Python
Published by Ebedthan about 2 years ago

conodictor - conodictor 2.3.5

Minor release with a bunch of improvements

- Python
Published by Ebedthan over 3 years ago

conodictor - conodictor 2.3.4

Minor release

• Improve error reporting to the user
• Improve logging
• Various typo fixes and bugs

Thanks, cite, and enjoy!

- Python
Published by Ebedthan almost 4 years ago

conodictor - conodictor 2.3.2

- Python
Published by Ebedthan about 4 years ago

conodictor - conodictor 2.3.1

• fix some bugs
• fix requirements.txt missing packages

- Python
Published by Ebedthan over 4 years ago

conodictor - conodictor 2.3.0

• Improved set of PSSMs and HMMs
• More options to control sequencing processing

- Python
Published by Ebedthan over 4 years ago

conodictor - conodictor 2.2.2

• Improve profile matching

- Python
Published by Ebedthan almost 5 years ago

conodictor - conodictor 2.2.1

• Maintainance release with removing of some options.

- Python
Published by Ebedthan almost 5 years ago

conodictor - conodictor 2.2.0

ConoDictor minor release v2.2.0.

• Add --mlen option: Minimum sequence length to consider for prediction.
• Add --ndup option: Minimum sequence occurrence of a sequence to be considered for prediction.
• Retire --graph option to put it in the main processing as of v2.0.0 with a fixed label annotation.
• Add sequence length, occurrence, and the number of cysteines in protein as basic stats to the output.

- Python
Published by Ebedthan about 5 years ago

conodictor - conodictor 2.1.4

• Make graph an option with --graph
• Add Dockerfile option for installation
• Lot of small fix

- Python
Published by Ebedthan about 5 years ago

conodictor - conodictor 2.1.3

Maintenance release

• Update version in conodictor script
• Add more comments

- Python
Published by Ebedthan about 5 years ago

conodictor - conodictor 2.1.2

- Python
Published by Ebedthan about 5 years ago

conodictor - conodictor 2.1.1

• Linting and formatting fix.

- Python
Published by Ebedthan about 5 years ago

conodictor - conodictor 2.1

Important changes

• Use pfscanV3 in place of pfsearch
• Add --cpus options
• Add UNKNOWN filter to output: --all option
• Update conodictor final classification function

- Python
Published by Ebedthan about 5 years ago

conodictor - conodictor 2.0.1

• Fix bug in results parsing.
• Add more informative error messages.

- Python
Published by Ebedthan about 5 years ago

conodictor - conodictor 2.0

• Next major release since conodictor v1.0.
• Updated HMMs and PSSMs profiles.
• Accelerated prediction with python command-line.

- Python
Published by Ebedthan about 5 years ago