c-elegans-rate-analysis
https://github.com/p-sivaramakrishnan/c-elegans-rate-analysis
Science Score: 67.0%
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Links to: science.org -
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○Scientific vocabulary similarity
Low similarity (4.5%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: p-sivaramakrishnan
- Language: R
- Default Branch: main
- Size: 858 KB
Statistics
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
Transcript accuumulation rates in the early Caenorhabditis elegans embryo
Priya Sivaramakrishnan, Cameron Watkins and John Isaac Murray
Manuscript link: https://www.science.org/doi/10.1126/sciadv.adi1270
This includes code to rerun analysis associated with our paper Transcript accuumulation rates in the early Caenorhabditis elegans embryo
Available analysis include: - Accumulation rate estimation from Tintori and Packer single cell RNA-seq data in C. elegans embryonic cells - TSS prioritization using previous annotations from Chen et al, Saito et al and Kruesi et al - Gene structure (chromosone location, gene length, intron number, length, outron vs. not (from Saito) and isoform) comparisons across gene categories - Karyogram and motif plotting - Half life predictions from Hashimshony et al. data
Owner
- Login: p-sivaramakrishnan
- Kind: user
- Repositories: 1
- Profile: https://github.com/p-sivaramakrishnan
Citation (CITATION.cff)
cff-version: 1.1.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Sivaramakrishnan
given-names: Priya
title: p-sivaramakrishnan/C-elegans-rate-analysis: C. elegans_transcript accumulation rates
version: v1.0
date-released: 2023-07-17