microstatements
cutsom RDF statements for bioinformatics to complete larger RDF databases like MONDO
Science Score: 54.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
✓Academic publication links
Links to: pubmed.ncbi, ncbi.nlm.nih.gov -
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (4.8%) to scientific vocabulary
Repository
cutsom RDF statements for bioinformatics to complete larger RDF databases like MONDO
Basic Info
- Host: GitHub
- Owner: lindenb
- License: apache-2.0
- Default Branch: master
- Size: 9.77 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
microstatements
Motivation
cutsom RDF statements for bioinformatics to complete larger RDF databases like MONDO
How to contribute
- clone this repo
- open
data/statements.01.ttlwith a text editor - add your info in the first lines, using your ORCID ID as a unique identifier. e.g:
orcid:0000-0000-0123-456
rdf:type foaf:Person ;
foaf:name "your name"
.
- add a new statements. e.g:
```ttl
<#stmt1786> dc:description "PITX2 and atrial fibrillation" ; rdf:type rdf:Statement ; rdf:subject obo:MONDO0004981 ; rdf:predicate obo:RO0004003 ; rdf:object hgnc:9005 ; dc:creator orcid:0000-0003-0148-9787 ; dc:created "2024-05-16"^^xsd:date ; dc:source pmid:38643172 .
```
where:
stmt1786is a unique name for your statementdc:description "PITX2 and atrial fibrillation"is a short description of the statement.rdf:subject obo:MONDO_0004981the subject for this statement statement is http://purl.obolibrary.org/obo/MONDO_0004981 atrial fibrillationrdf:predicate obo:RO_0004003the property for this statement is http://purl.obolibrary.org/obo/RO_0004003 has material basis in germline mutation inrdf:object hgnc:9005the object for this statement is https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9005 PITX2dc:creator orcid:0000-0003-0148-9787the author for this statementdc:created "2024-05-16"^^xsd:datethe date this statement was createddc:source pmid:38643172an article supporting this statement : https://pubmed.ncbi.nlm.nih.gov/38643172/ "TAD boundary deletion causes PITX2-related cardiac electrical and structural defects"submit the new statement using a pull request.
See also
- https://www.ebi.ac.uk/ols4/
- https://www.genenames.org/
- https://github.com/monarch-initiative/mondo
- https://www.w3.org/2015/03/ShExValidata/ (RDF validation)
License
The project is licensed under the MIT license.
Author
Pierre Lindenbaum PhD
Owner
- Name: Pierre Lindenbaum
- Login: lindenb
- Kind: user
- Location: Nantes, France
- Company: INSERM
- Website: https://genomic.social/web/@yokofakun
- Twitter: yokofakun
- Repositories: 86
- Profile: https://github.com/lindenb
Institut-du-Thorax, Nantes, France.
Citation (CITATION.cff)
cff-version: "1.0.0"
abstract: "cutsom RDF statements for bioinformatics to complete larger RDF databases like MONDO"
authors:
- family-names: "Lindenbaum"
given-names: "Pierre"
orcid: "https://orcid.org/0000-0003-0148-9787"
keywords:
- bioinformatics
- rdf
- knowledge
- disease
- gene
license: MIT
message: "If you use this software, please cite it using these metadata."
repository-code: "http://github.com/lindenb/microstatements"
title: microstatements
version: " 2024.05.06"