geometric_characterization

Set of Jupyter Notebooks for geometric characterization of porous media images from DPM Portal.

https://github.com/digital-porous-media/geometric_characterization

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Academic email domains
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (5.5%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

Set of Jupyter Notebooks for geometric characterization of porous media images from DPM Portal.

Basic Info
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 3
  • Releases: 2
Created over 2 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Citation Codemeta

README.md

Geometric Characterization Workflow

Project Status: Active – The project has reached a stable, usable state and is being actively developed.

This tutorial includes a set of Jupyter Notebooks for the geometric characterization of porous media images from the Digital Rocks Portal. There are three notebooks for the characterization. These are: 1. Minkowski Functionals; 2. Heterogeneity Measurement; 3. Competent Subset Selection.

In (1), we calculate four Minkowski functionals in 3D. These functionals are volume, surface area, integral mean curvature, and Euler characteristic.

In (2), we measure whether a rock sample is heterogeneous or homogeneous based on scale-independent porosity variance calculations within a moving window of increasing size.

In (3), we chose a subset of the data that is good enough for visualization, simulation, and 3D printing.

Owner

  • Name: Digital Porous Media
  • Login: digital-porous-media
  • Kind: organization
  • Email: bcchang@utexas.edu

Citation (CITATION.cff)

# This CITATION.cff file was generated with cffinit.

cff-version: 1.2.0
title: geometric_characterization
message: >-
  If you use this software, you can cite it using the
  metadata from this file.
type: software
authors:
  - given-names: 'Bernard '
    family-names: Chang
    email: bcchang@utexas.edu
    affiliation: The University of Texas at Austin
    orcid: 'https://orcid.org/0000-0000-0000-0000'
  - given-names: Cinar
    family-names: Turhan
    email: cinarturhan@utexas.edu
    affiliation: The University of Texas at Austin
    orcid: 'https://orcid.org/0000-0003-2533-7016'
  - given-names: Ali
    family-names: Mohamed
    email: ali.mohamed@austin.utexas.edu
    affiliation: The University of Texas at Austin
    orcid: 'https://orcid.org/0000-0000-0000-0000'
  - given-names: Masa
    family-names: Prodanovic
    email: masha@utexas.edu
    affiliation: The University of Texas at Austin
    orcid: 'https://orcid.org/0000-0000-0000-0000'
#identifiers:
#  - type: doi
#    value: 10.1234/zenodo.1234
#    description: To be filled
repository-code: 'https://github.com/orgs/digital-porous-media/repositories'
url: >-
  https://github.com/digital-porous-media/geometric_characterization
abstract: >-
  Set of Jupyter Notebooks for geometric characterization of
  porous media images from the DPM Portal.
keywords:
  - minkowski
  - porous-media
  - 3d-subset
  - digital-rocks
license: MIT
version: '1.0.0'
date-released: '2024-02-14'

CodeMeta (codemeta.json)

{
  "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
  "@type": "SoftwareSourceCode",
  "license": "https://spdx.org/licenses/MIT",
  "codeRepository": "https://github.com/digital-porous-media/geometric_characterization",
  "dateCreated": "2024-01-10",
  "datePublished": "2024-02-14",
  "dateModified": "2024-02-14",
  "issueTracker": "https://github.com/digital-porous-media/geometric_characterization/issues",
  "name": "geometric_characterization",
  "version": "1.0.0",
  "identifier": "10.1234/zenodo.1234",
  "description": "Set of Jupyter Notebooks for geometric characterization of porous media images from the DPM Portal.",
  "applicationCategory": "Geosciences",
  "releaseNotes": "Initial release",
  "developmentStatus": "concept",
  "isPartOf": "https://github.com/digital-porous-media",
  "keywords": [
    "minkowski",
    "porous-media",
    "3d-subset",
    "digital-rocks"
  ],
  "programmingLanguage": [
    "python 3"
  ],
  "runtimePlatform": [
    "python interpreter"
  ],
  "softwareRequirements": [
    "https://github.com/digital-porous-media/geometric_characterization/blob/main/requirements.txt"
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  "relatedLink": [
    "https://github.com/digital-porous-media"
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  "author": [
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      "givenName": "Masa",
      "familyName": "Prodanovic",
      "email": "masha@utexas.edu",
      "affiliation": {
        "@type": "Organization",
        "name": "The University of Texas at Austin"
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    {
      "@type": "Person",
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      "givenName": "Bernard",
      "familyName": "Chang",
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      "affiliation": {
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  ]
}

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Dependencies

requirements.txt pypi
  • connected-components-3d *
  • ipywidgets *
  • matplotlib *
  • notebook *
  • numpy *
  • pandas *
  • porespy *
  • pyarrow *
  • pyvista *
  • quantimpy *
  • scikit-image *
  • scipy *
  • tifffile *
  • tqdm *
  • trimesh *
  • wget *
quantimpy-0.4.6/pyproject.toml pypi
quantimpy-0.4.6/setup.py pypi
  • edt *
  • matplotlib *
  • numpy *
  • scipy *