Releases | Open Source Science

https://github.com/arviz-devs/arviz.jl - v0.12.3

ArviZ v0.12.3

Merged pull requests: - CompatHelper: bump compat for Turing to 0.38 for package docs, (keep existing compat) (#385) (@github-actions[bot]) - CompatHelper: bump compat for MCMCChains in [weakdeps] to 7, (keep existing compat) (#386) (@github-actions[bot]) - CompatHelper: bump compat for Turing to 0.39 for package docs, (keep existing compat) (#388) (@github-actions[bot]) - CompatHelper: bump compat for CairoMakie to 0.14 for package docs, (keep existing compat) (#389) (@github-actions[bot]) - CompatHelper: bump compat for AlgebraOfGraphics to 0.11 for package docs, (keep existing compat) (#390) (@github-actions[bot]) - CompatHelper: bump compat for CairoMakie to 0.15 for package docs, (keep existing compat) (#391) (@github-actions[bot]) - CompatHelper: bump compat for Turing to 0.40 for package docs, (keep existing compat) (#392) (@github-actions[bot]) - Don't constrain version numbers for extension test dependencies (#393) (@sethaxen)

- Julia
Published by github-actions[bot] 10 months ago

https://github.com/arviz-devs/arviz.jl - v0.12.2

ArviZ v0.12.2

Diff since v0.12.1

Merged pull requests: - Bump compat entries for docs dependencies (#383) (@sethaxen)

Closed issues: - patch version? (#381)

- Julia
Published by github-actions[bot] about 1 year ago

https://github.com/arviz-devs/arviz.jl - v0.12.1

ArviZ v0.12.1

Diff since v0.12.0

Merged pull requests: - CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#353) (@github-actions[bot]) - Bump docs dependency compats (#355) (@sethaxen) - Run CI on pre-release versions (#356) (@sethaxen) - CompatHelper: bump compat for Turing to 0.34 for package docs, (keep existing compat) (#357) (@github-actions[bot]) - Bump codecov/codecov-action from 4 to 5 (#371) (@dependabot[bot]) - Bump docs and tests compat for DimensionalData to v0.28,v0.29 (#379) (@sethaxen)

Closed issues: - ArviZ - CairoMakie interaction causes Turing compile to fail (#351)

- Julia
Published by github-actions[bot] about 1 year ago

https://github.com/arviz-devs/arviz.jl - v0.12.0

ArviZ v0.12.0

Diff since v0.11.0

Merged pull requests: - CompatHelper: bump compat for InferenceObjects to 0.4, (keep existing compat) (#341) (@github-actions[bot]) - Bump julia-actions/cache from 1 to 2 (#345) (@dependabot[bot]) - Bump compat for DimensionalData v0.27 (#350) (@sethaxen) - Bump dependency lower bounds (#352) (@sethaxen)

- Julia
Published by github-actions[bot] almost 2 years ago

https://github.com/arviz-devs/arviz.jl - v0.11.0

ArviZ v0.11.0

Diff since v0.10.5

Merged pull requests: - Bump julia-actions/setup-julia from 1 to 2 (#334) (@dependabot[bot]) - Remove parsing of Stan-style indices in MCMCChains (#347) (@sethaxen)

- Julia
Published by github-actions[bot] almost 2 years ago

https://github.com/arviz-devs/arviz.jl - v0.10.5

ArviZ v0.10.5

Diff since v0.10.4

Merged pull requests: - Bump actions/cache from 3 to 4 (#327) (@dependabot[bot]) - Bump codecov/codecov-action from 3 to 4 (#328) (@dependabot[bot]) - CompatHelper: bump compat for DimensionalData to 0.26 for package docs, (keep existing compat) (#330) (@github-actions[bot]) - CompatHelper: bump compat for DimensionalData to 0.26 for package ArviZMCMCChainsExt, (keep existing compat) (#331) (@github-actions[bot]) - CompatHelper: bump compat for DimensionalData to 0.26 for package ArviZSampleChainsDynamicHMCExt, (keep existing compat) (#332) (@github-actions[bot]) - CompatHelper: bump compat for DimensionalData to 0.26 for package ArviZSampleChainsExt, (keep existing compat) (#333) (@github-actions[bot])

Closed issues: - Docs build broken on Julia v1.10 (#326)

- Julia
Published by github-actions[bot] about 2 years ago

https://github.com/arviz-devs/arviz.jl - v0.10.4

ArviZ v0.10.4

Diff since v0.10.3

Merged pull requests: - MassInstallAction: Install the Dependabot workflow on this repository (#299) (@sethaxen) - Add checkout step to CompatHelper workflow (#318) (@sethaxen) - Bump actions/checkout from 2 to 4 (#319) (@dependabot[bot]) - Bump actions/github-script from 5 to 7 (#320) (@dependabot[bot]) - Bump codecov/codecov-action from 1 to 3 (#321) (@dependabot[bot]) - Bump actions/cache from 2 to 3 (#322) (@dependabot[bot]) - CompatHelper: bump compat for Turing to 0.30 for package docs, (keep existing compat) (#323) (@github-actions[bot]) - CompatHelper: bump compat for PosteriorStats to 0.2, (keep existing compat) (#324) (@github-actions[bot])

- Julia
Published by github-actions[bot] over 2 years ago

https://github.com/arviz-devs/arviz.jl - v0.10.3

ArviZ v0.10.3

Diff since v0.10.2

Merged pull requests: - Fix CompatHelper and bump MLJBase and MLJIteration versions for docs build (#300) (@sethaxen) - Update Stan model to new array syntax (#310) (@sethaxen) - Build docs with Documenter v1 (#311) (@sethaxen) - Add missing compat bounds to docs deps (#312) (@sethaxen) - CompatHelper: bump compat for Turing to 0.29 for package docs, (keep existing compat) (#314) (@github-actions[bot]) - CompatHelper: bump compat for CairoMakie to 0.11 for package docs, (keep existing compat) (#316) (@github-actions[bot]) - Run extension tests in separate workflow (#317) (@sethaxen)

Closed issues: - Improve Stan conversion and docs (#31)

- Julia
Published by github-actions[bot] over 2 years ago

https://github.com/arviz-devs/arviz.jl - v0.10.2

ArviZ v0.10.2

Diff since v0.10.1

Merged pull requests: - Restore and update quickstart docs page (#296) (@sethaxen)

- Julia
Published by github-actions[bot] almost 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.10.1

ArviZ v0.10.1

Diff since v0.10.0

Merged pull requests: - Rebuild documentation (#298) (@sethaxen)

- Julia
Published by github-actions[bot] almost 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.10.0

ArviZ v0.10.0

Diff since v0.9.2

Closed issues: - Implement stats and diagnostics in new lightweight Julia package (#129)

Merged pull requests: - Convert ArviZ.jl into a meta-package (#297) (@sethaxen)

- Julia
Published by github-actions[bot] almost 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.9.2

ArviZ v0.9.2

Diff since v0.9.1

Merged pull requests: - Implement summarystats for InferenceObjects types (#294) (@sethaxen)

- Julia
Published by github-actions[bot] almost 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.9.1

ArviZ v0.9.1

Diff since v0.9.0

Closed issues: - trouble installing with Julia 1.6.2 (#137) - Add support for arviz v0.12.0 (#172) - Better reproducibility wrapping Python ArviZ (#187) - ArviZ fails to load when scipy.fft is imported (#188) - Cannot load package (#206) - Move converters to extensions (#288)

Merged pull requests: - Move converters from PPLs to extensions (#293) (@sethaxen)

- Julia
Published by github-actions[bot] almost 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.9.0

ArviZ v0.9.0

Diff since v0.8.2

Closed issues: - Support new arviz v0.10.0 features (#92) - Make ArviZ.jl more Julian (#130) - Using MultiDocumenter (#224)

Merged pull requests: - Replace Python diagnostics with MCMCDiagnosticTools (#267) (@sethaxen) - Remove some forwarded Python functons (#268) (@sethaxen) - CompatHelper: bump compat for PSIS to 0.8, (keep existing compat) (#273) (@github-actions[bot]) - Implement PSIS-LOO and WAIC (#275) (@sethaxen) - Add Julia implementation of LOO-PIT (#277) (@sethaxen) - Add Julia implementations of model weighting and comparison (#280) (@sethaxen) - Remove NCDatasets as an indirect dependency (#282) (@sethaxen) - Add Julia implementation of unimodal HDI (#283) (@sethaxen) - Add Julia implementation of r2_score (#285) (@sethaxen) - Add examples with doctests to stats funs (#286) (@sethaxen) - Add and bump main, test, and docs compats (#289) (@sethaxen) - Remove all Python-related code (#290) (@sethaxen) - Temporarily remove quickstart docs (#292) (@sethaxen)

- Julia
Published by github-actions[bot] almost 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.8.2

ArviZ v0.8.2

Diff since v0.8.1

Merged pull requests: - MassInstallAction: Install the DocsPreviewCleanup workflow on this repository (#263) (@sethaxen) - Update URLs to docs and remove badges from docs (#264) (@sethaxen)

- Julia
Published by github-actions[bot] over 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.8.1

ArviZ v0.8.1

Diff since v0.8.0

Closed issues: - Converting directly from StanSample (#238)

Merged pull requests: - Document StanSample usage with ArviZ (#261) (@sethaxen)

- Julia
Published by sethaxen over 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.8.0

ArviZ v0.8.0

Diff since v0.7.1

Merged pull requests: - Update default dimension order (#258) (@sethaxen) - Remove deprecated functions (#259) (@sethaxen) - Minor updates to docs build (#260) (@sethaxen)

- Julia
Published by github-actions[bot] over 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.7.1

ArviZ v0.7.1

Diff since v0.7.0

Closed issues: - Installing ArviZ.jl in a new environment results in arviz version error (0.13.0 or greater but found version 0.12.1) (#246) - Precompilation failed (#248)

Merged pull requests: - Remove upper bounds on matplotlib and pandas dependencies (#257) (@sethaxen)

- Julia
Published by github-actions[bot] over 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.7.0

ArviZ v0.7.0

Diff since v0.6.7

Closed issues: - Move InferenceData examples to own repo (#222)

Merged pull requests: - CompatHelper: bump compat for PlutoStaticHTML to 6 for package docs, (keep existing compat) (#214) (@github-actions[bot]) - CompatHelper: bump compat for CairoMakie to 0.9 for package docs, (keep existing compat) (#236) (@github-actions[bot]) - Update to use InferenceObjects v0.2 (#240) (@sethaxen) - Remove all bokeh and backend related code (#244) (@sethaxen)

- Julia
Published by github-actions[bot] over 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.6.7

ArviZ v0.6.7

Diff since v0.6.6

Merged pull requests: - Update to Python ArviZ v0.13.0 compatibility (#237) (@sethaxen)

- Julia
Published by github-actions[bot] over 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.6.6

ArviZ v0.6.6

Diff since v0.6.5

Merged pull requests: - MassInstallAction: Install the Invalidations workflow on this repository (#225) (@sethaxen) - Remove unused docs dependencies (#230) (@sethaxen) - Fix Python dependency issues breaking CI (#234) (@sethaxen) - Fix broken doctest (#235) (@sethaxen)

- Julia
Published by github-actions[bot] over 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.6.5

ArviZ v0.6.5

Diff since v0.6.4

Merged pull requests: - Remove Soss example from Quickstart (#226) (@sethaxen)

- Julia
Published by github-actions[bot] over 3 years ago

https://github.com/arviz-devs/arviz.jl - v0.6.4

ArviZ v0.6.4

Diff since v0.6.3

Merged pull requests: - Add example data loading (#212) (@sethaxen) - Use subtree for example data (#221) (@sethaxen)

- Julia
Published by github-actions[bot] almost 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.6.3

ArviZ v0.6.3

Diff since v0.6.2

Closed issues: - Separating InferenceData and Dataset into their own package (#207)

Merged pull requests: - Depend on and export InferenceObjects (#220) (@sethaxen)

- Julia
Published by github-actions[bot] almost 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.6.2

ArviZ v0.6.2

Diff since v0.6.1

Merged pull requests: - Update DimensionalData compat (#218) (@sethaxen) - Move fromnamedtuple to inferencedata docs page (#219) (@sethaxen)

- Julia
Published by github-actions[bot] almost 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.6.1

ArviZ v0.6.1

Diff since v0.6.0

Closed issues: - Implement the Tables interface for Dataset (#141) - Removing bokeh plotting backend (#193) - Documenting InferenceData usage (#194) - Quickstart page build failing (#199)

Merged pull requests: - Move Dataset and InferenceData into module (#213) (@sethaxen)

- Julia
Published by github-actions[bot] almost 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.6.0

ArviZ v0.6.0

Diff since v0.5.22

Closed issues: - Implement pure Julia InferenceData scheme (#128) - Removing MonteCarloMeasurements support (#192)

Merged pull requests: - Add LD_PRELOAD flag to CI (#189) (@sethaxen) - Reimplement Dataset and InferenceData using DimensionalData (#191) (@sethaxen) - Remove support for MonteCarloMeasurements (#195) (@sethaxen) - Deprecate bokeh backend (#196) (@sethaxen) - Add fancy indexing of InferenceData (#198) (@sethaxen) - Simplify summarystats implementation (#200) (@sethaxen) - Refactor documentation (#201) (@sethaxen) - Install scipy dependency from pypi (#202) (@sethaxen) - Add tutorial on creating custom plots (#203) (@sethaxen)

- Julia
Published by github-actions[bot] almost 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.22

ArviZ v0.5.22

Diff since v0.5.21

Closed issues: - Error passing results from loo to compare (#183)

Merged pull requests: - Convert arguments for ArviZ.compare (#185) (@sethaxen)

- Julia
Published by github-actions[bot] about 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.21

ArviZ v0.5.21

Diff since v0.5.20

Merged pull requests: - CompatHelper: add new compat entry for ArviZ at version 0.5 for package docs, (keep existing compat) (#175) (@github-actions[bot]) - Fix duplicated logo in readme (#179) (@OriolAbril) - CompatHelper: bump compat for PlutoStaticHTML to 5 for package docs, (keep existing compat) (#180) (@github-actions[bot]) - Update links to point to new domain (#181) (@sethaxen) - CompatHelper: bump compat for PSIS to 0.4, (keep existing compat) (#182) (@github-actions[bot]) - CompatHelper: bump compat for PSIS to 0.5, (keep existing compat) (#184) (@github-actions[bot])

- Julia
Published by github-actions[bot] about 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.20

ArviZ v0.5.20

Diff since v0.5.19

Merged pull requests: - Fix a few typos (#177) (@pitmonticone) - Stop testing psis against Python arviz (#178) (@sethaxen)

- Julia
Published by github-actions[bot] about 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.19

ArviZ v0.5.19

Diff since v0.5.18

Merged pull requests: - Add support for arviz v0.12.0 (#176) (@sethaxen)

- Julia
Published by github-actions[bot] about 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.18

ArviZ v0.5.18

Diff since v0.5.17

Closed issues: - Use new logos (#173)

Merged pull requests: - Use new project logos (#174) (@sethaxen)

- Julia
Published by github-actions[bot] about 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.17

ArviZ v0.5.17

Diff since v0.5.16

Merged pull requests: - Make the Quickstart docs a Pluto notebook (#136) (@sethaxen)

- Julia
Published by github-actions[bot] about 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.16

ArviZ v0.5.16

Diff since v0.5.15

Closed issues: - Remove ArviZ.jl-specific logo (#151) - Increase Julia lower bound to 1.6 (#153)

Merged pull requests: - Remove ArviZ.jl-specific logo (#170) (@sethaxen) - Use Julia v1.6 syntax simplifications (#171) (@sethaxen)

- Julia
Published by github-actions[bot] about 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.15

ArviZ v0.5.15

Diff since v0.5.14

Merged pull requests: - Make Julia 1.6 the minimum supported version (#159) (@sethaxen) - Update docs and test compats with CompatHelper (#160) (@sethaxen)

- Julia
Published by github-actions[bot] about 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.14

ArviZ v0.5.14

Diff since v0.5.13

Merged pull requests: - Remove NamedTupleTools as dependency (#158) (@sethaxen)

- Julia
Published by github-actions[bot] about 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.13

ArviZ v0.5.13

Diff since v0.5.12

Merged pull requests: - Fix StackOverflowError of from_mcmcchains for large number of variables (#156) (@torfjelde)

- Julia
Published by github-actions[bot] over 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.12

ArviZ v0.5.12

Diff since v0.5.11

Merged pull requests: - CompatHelper: bump compat for PSIS to 0.3, (keep existing compat) (#155) (@github-actions[bot])

- Julia
Published by github-actions[bot] over 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.11

ArviZ v0.5.11

Diff since v0.5.10

Closed issues: - Prior predictive keyword arg not used in from_mcmcchains (#146)

Merged pull requests: - Support passing priorpredictive without prior to frommcmcchains (#152) (@sethaxen)

- Julia
Published by github-actions[bot] over 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.10

ArviZ v0.5.10

Diff since v0.5.9

Closed issues: - [Security] Workflow format_check.yml is using vulnerable action actions/checkout (#145)

Merged pull requests: - Use test-specific Project.toml and clean up workflows (#150) (@sethaxen)

- Julia
Published by github-actions[bot] over 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.9

ArviZ v0.5.9

Diff since v0.5.8

Merged pull requests: - Fix psis test (#148) (@sethaxen) - Bump compats for optional dependencies (#149) (@sethaxen)

- Julia
Published by github-actions[bot] over 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.8

ArviZ v0.5.8

Diff since v0.5.7

Merged pull requests: - Update NF to sponsored (#143) (@canyon289) - Use PSIS.jl for Pareto-smoothing (#144) (@sethaxen)

- Julia
Published by github-actions[bot] over 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.7

ArviZ v0.5.7

Diff since v0.5.6

Merged pull requests: - Add compatibility with arviz v0.11.3 and up (#142) (@sethaxen)

- Julia
Published by github-actions[bot] over 4 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.6

ArviZ v0.5.6

Diff since v0.5.5

Closed issues: - Order of the multi-level parameter is not preserved when converted into InferenceData (#138)

Merged pull requests: - Sort variable indices from MCMCChains ourselves (#139) (@sethaxen)

- Julia
Published by github-actions[bot] almost 5 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.5

ArviZ v0.5.5

Diff since v0.5.4

Closed issues: - Support recent Soss versions (#124)

Merged pull requests: - Add converter from Soss's SampleChains (#131) (@sethaxen) - Make the format-check action suggest formatting fixes (#135) (@sethaxen)

- Julia
Published by github-actions[bot] almost 5 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.4

ArviZ v0.5.4

Diff since v0.5.3

Closed issues: - Allow specifying variable eltype in converters (#125)

Merged pull requests: - Add eltypes keyword to from_mcmcchains (#127) (@sethaxen)

- Julia
Published by github-actions[bot] about 5 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.3

ArviZ v0.5.3

Diff since v0.5.2

Merged pull requests: - Minor refactor of internals (#126) (@sethaxen)

- Julia
Published by github-actions[bot] about 5 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.2

ArviZ v0.5.2

Diff since v0.5.1

Closed issues: - Docs build times out after 6 hours (#119)

Merged pull requests: - CompatHelper: bump compat for "DataFrames" to "1.0" (#117) (@github-actions[bot]) - Fix for #119 (#123) (@torfjelde)

- Julia
Published by github-actions[bot] about 5 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.1

ArviZ v0.5.1

Diff since v0.5.0

Merged pull requests: - Update the Turing example (#115) (@sethaxen) - add analytics to docs (#116) (@OriolAbril) - Evaluate quickstart sections in different modules (#118) (@sethaxen) - Commit docs Manifest pinning DynamicPPL (#120) (@sethaxen) - Instruct Documenter that the primary development branch is main (#122) (@sethaxen)

- Julia
Published by github-actions[bot] about 5 years ago

https://github.com/arviz-devs/arviz.jl - v0.5.0

ArviZ v0.5.0

Diff since v0.4.11

Merged pull requests: - Rename master branch to main (#107) (@sethaxen) - Remove hpd, plothpd, and geweke (#109) (@sethaxen) - Test both old and new variable name formats in summarystats (#110) (@sethaxen) - Fix VersionVigilante to run on main not master (#111) (@sethaxen) - Update MCMCChains samplestats names to match scheme (#112) (@sethaxen) - Add scheduled futures CI run to workflow (#113) (@sethaxen)