Data

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Open Source Science

https://github.com/arvkevi/openhumansimputer

Imputation pipeline for Open Humans

https://github.com/arvkevi/openhumansimputer

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.9%) to scientific vocabulary

Keywords

genomics imputation open-data open-science
Last synced: 6 months ago · JSON representation

Repository

Imputation pipeline for Open Humans

Basic Info
  • Host: GitHub
  • Owner: arvkevi
  • License: mit
  • Language: Python
  • Default Branch: master
  • Homepage: https://openimpute.com/
  • Size: 1.19 MB
Statistics
  • Stars: 15
  • Watchers: 3
  • Forks: 2
  • Open Issues: 17
  • Releases: 0
Topics
genomics imputation open-data open-science
Created almost 8 years ago · Last pushed 7 months ago
Metadata Files
Readme License

README.md

Imputer: Genotype imputation pipeline for Open Humans

More Information

This repository is the source code for the Imputer application for Open Humans.
More information can be found at the homepage: openimpute.com

Contribute

Please submit an issue if you find a bug or a pull request if you would like to contribute to the pipeline.

Owner

  • Name: Kevin Arvai
  • Login: arvkevi
  • Kind: user
  • Location: Washington, D.C.

Data science & clinical genomics

GitHub Events

Total
  • Watch event: 1
  • Delete event: 23
  • Issue comment event: 23
  • Push event: 454
  • Pull request event: 48
  • Create event: 20
Last Year
  • Watch event: 1
  • Delete event: 23
  • Issue comment event: 23
  • Push event: 454
  • Pull request event: 48
  • Create event: 20

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 16
  • Average time to close issues: N/A
  • Average time to close pull requests: 8 days
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.69
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 16
  • Average time to close issues: N/A
  • Average time to close pull requests: 8 days
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.69
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • pyup-bot (67)
Top Labels
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Dependencies

requirements.txt pypi
  • Babel ==2.6.0
  • Django ==2.2.10
  • Jinja2 >=2.10.1
  • MarkupSafe ==1.1.0
  • Pygments ==2.3.1
  • amqp ==2.4.0
  • arrow ==0.13.0
  • backcall ==0.1.0
  • billiard ==3.5.0.5
  • celery ==4.2.1
  • certifi ==2018.11.29
  • chardet ==3.0.4
  • click ==7.0
  • configparser ==3.7.1
  • decorator ==4.3.2
  • dj-database-url ==0.5.0
  • django-extensions ==2.1.4
  • env-tools ==2.2.0
  • flower ==0.9.2
  • genipe ==1.4.2
  • gunicorn ==19.9.0
  • humanfriendly ==4.17
  • idna ==2.8
  • ipython ==7.2.0
  • ipython-genutils ==0.2.0
  • jedi ==0.13.2
  • kombu ==4.2.2.post1
  • numpy ==1.16.1
  • oauthlib ==3.0.1
  • open-humans-api ==0.2.5
  • pandas ==0.24.0
  • parso ==0.3.2
  • pexpect ==4.6.0
  • pickleshare ==0.7.5
  • prompt-toolkit ==2.0.8
  • psycopg2 ==2.7.7
  • ptyprocess ==0.6.0
  • python-dateutil ==2.7.5
  • pytz ==2018.9
  • pyyaml >=4.2b1
  • redis ==3.1.0
  • requests ==2.21.0
  • requests-oauthlib ==1.2.0
  • sentry-sdk ==0.9.5
  • simplegeneric ==0.8.1
  • six ==1.12.0
  • tini ==3.0.1
  • tornado ==5.1.1
  • traitlets ==4.3.2
  • urllib3 ==1.24.2
  • vine ==1.2.0
  • wcwidth ==0.1.7
  • whitenoise ==4.1.3