mitogenomes
Scripts and commands to conduct sponge mitogenomic analyses
Science Score: 44.0%
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○Scientific vocabulary similarity
Low similarity (3.6%) to scientific vocabulary
Repository
Scripts and commands to conduct sponge mitogenomic analyses
Basic Info
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- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
Mitogenomes
Tools, scripts, and commands to conduct bioinformatic analyses on mitochondrial genomes.
To install packages and softwares, see this page.
To dump, clean, map and assemble reads, see this page. If you prefer mapping reads using Bowtie2, see this page.
To extract data fom Genbank files, use the python scripts: - gbex_translation.py → for amino acid data from translated proteins - gbex_rrnaseq.py → for nucleotide data from rRNAs - gbex_gene.py → for nucleotide data from all genes (including tRNAs)
To conduct a phylogenomic analysis, see this page.
Owner
- Name: Thiago S. de Paula
- Login: depaulats
- Kind: user
- Location: Rio de Janeiro, Brazil
- Company: UERJ
- Repositories: 2
- Profile: https://github.com/depaulats
Citation (CITATION.cff)
cff-version: 1.1.0
message: "If you use these commands and scripts, please consider citing them as below."
authors:
- family-names: de Paula
given-names: Thiago
orcid: https://orcid.org/0000-0003-4468-4996
title:depaulats/Mitogenomes: v.2024.1
version: v.2024.1
date-released: 2024-08-06
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