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scrattch.bigcat

iterative clustering pipeline of big single cell datasets.

https://github.com/alleninstitute/scrattch.bigcat

Science Score: 62.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ✓
    Committers with academic emails
    3 of 4 committers (75.0%) from academic institutions
  • ✓
    Institutional organization owner
    Organization alleninstitute has institutional domain (alleninstitute.org)
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.6%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

iterative clustering pipeline of big single cell datasets.

Basic Info
  • Host: GitHub
  • Owner: AllenInstitute
  • Language: R
  • Default Branch: master
  • Size: 4.22 MB
Statistics
  • Stars: 33
  • Watchers: 11
  • Forks: 10
  • Open Issues: 5
  • Releases: 0
Created almost 7 years ago · Last pushed 7 months ago
Metadata Files
Citation

Owner

  • Name: Allen Institute
  • Login: AllenInstitute
  • Kind: organization
  • Location: Seattle, WA

Please visit http://alleninstitute.github.io/ for more information.

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
  - family-names: "Yao"
    given-names: "Zizhen"
    orcid: "https://orcid.org/0000-0002-9361-5607"
  - family-names: "Graybuck"
    given-names: "Lucas"
    orcid: "https://orcid.org/0000-0002-8814-6818"
  - family-names: "van Velthoven"
    given-names: "Cindy"
    orcid: "https://orcid.org/0000-0001-5120-4546"
  - family-names: "Lee"
    given-names: "Changkyu"
    orcid: "https://orcid.org/0000-0001-6146-0404"
  - family-names: "Gao"
    given-names: "Yuan"
    orcid: "https://orcid.org/0000-0002-6365-7646"
  - family-names: "Bakken"
    given-names: "Trygve"
    orcid: "https://orcid.org/0000-0003-3373-7386"
  - family-names: "Miller"
    given-names: "Jeremy"
    orcid: "https://orcid.org/0000-0003-4549-588X"
  - family-names: "Sedeno-Cortes"
    given-names: "Adriana"
    orcid: "https://orcid.org/0000-0001-7959-8970"
  - family-names: "Somasundaram"
    given-names: "Saroja"
    orcid: "https://orcid.org/0000-0002-3729-9849"
title: "scrattch.bigcat: Iterative Clustering Analysis for Transcriptomic data for big matrix"
version: 0.0.5
date-released: 2023-03-06

GitHub Events

Total
  • Issues event: 1
  • Watch event: 9
  • Delete event: 5
  • Push event: 9
  • Pull request review event: 1
  • Pull request event: 5
  • Create event: 2
Last Year
  • Issues event: 1
  • Watch event: 9
  • Delete event: 5
  • Push event: 9
  • Pull request review event: 1
  • Pull request event: 5
  • Create event: 2

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 109
  • Total Committers: 4
  • Avg Commits per committer: 27.25
  • Development Distribution Score (DDS): 0.248
Past Year
  • Commits: 7
  • Committers: 2
  • Avg Commits per committer: 3.5
  • Development Distribution Score (DDS): 0.143
Top Committers
Name Email Commits
Zizhen Yao z****y@a****g 82
cvanvelt 4****t 24
Yuan Gao y****o@h****g 2
Nathan Gouwens n****g@a****g 1
Committer Domains (Top 20 + Academic)
alleninstitute.org: 2 hpc-login.corp.alleninstitute.org: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 8
  • Total pull requests: 26
  • Average time to close issues: 3 months
  • Average time to close pull requests: about 2 months
  • Total issue authors: 8
  • Total pull request authors: 4
  • Average comments per issue: 0.88
  • Average comments per pull request: 0.04
  • Merged pull requests: 22
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: about 4 hours
  • Issue authors: 1
  • Pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • QianChwnLyn (1)
  • likangk (1)
  • salwanbutrus (1)
  • Sally-Xiaowei (1)
  • BeyondMyPast228 (1)
  • ShaowenJ (1)
  • cvanvelt (1)
  • yzizhen (1)
Pull Request Authors
  • cvanvelt (21)
  • y-gao (3)
  • gouwens (2)
  • jeremymiller (1)
Top Labels
Issue Labels
bug (1)
Pull Request Labels

Dependencies

DESCRIPTION cran
  • R >= 4.0.0 depends
  • BiocNeighbors * imports
  • Matrix * imports
  • Rcpp * imports
  • RcppAnnoy * imports
  • RcppEigen * imports
  • RcppParallel * imports
  • RcppProgress * imports
  • arrow * imports
  • data.table * imports
  • dendextend * imports
  • doMC * imports
  • doParallel * imports
  • dplyr * imports
  • foreach * imports
  • ggplot2 * imports
  • grid * imports
  • igraph * imports
  • matrixStats * imports
  • parallel * imports
  • pvclust * imports
  • Rphenograph * suggests
  • Rtsne * suggests
  • WGCNA * suggests
  • covr * suggests
  • knitr * suggests
  • qlcMatrix * suggests
  • rmarkdown * suggests
  • testthat * suggests