https://github.com/astrazeneca/inspectumours
This is a shiny tool to classify and analyse pre-clinical tumour data automatically.
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.8%) to scientific vocabulary
Repository
This is a shiny tool to classify and analyse pre-clinical tumour data automatically.
Basic Info
- Host: GitHub
- Owner: AstraZeneca
- License: other
- Language: R
- Default Branch: main
- Size: 989 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 1
- Open Issues: 3
- Releases: 0
Metadata Files
README.md
IN-vivo reSPonsE Classification of Tumours (INSPECTumours)
The package was built under R version 4.1.1
Project information
This is a shiny tool to classify and analyse pre-clinical tumour data automatically.
Software requirements
Depends: R (>= 3.5.0) Imports: brms, dplyr, DT, ggeffects, ggplot2, knitr, lme4, modelr, pander, plotly, purrr, readxl, rlang, rmarkdown, shiny, shinyalert, shinyFeedback, shinyjs, shinytoastr, shinyvalidate, tidybayes, tippy, tidyr, vroom, waiter
How to use
In order to use this package, please follow the instruction below.
Install from CRAN
r
install.packages("INSPECTumours")
R 4.2 on Windows
The Rstan is a dependancy of the brms package that is used to build models in the app.
The current CRAN Rstan (version 2.21.5) does not work with R 4.2 on Windows.
You need to install rstan and StanHeaders packages from the Stan R package repository. ```r
if you have installed packages from CRAN
remove.packages(c("rstan", "StanHeaders"))
install.packages("rstan", repos = c("https://mc-stan.org/r-packages/", getOption("repos"))) ```
Install from github (development version)
```r if (!requireNamespace("devtools", quietly = TRUE))
install.packages("devtools")
devtools::install_github("AstraZeneca/INSPECTumours")
```
Run App
```r library(INSPECTumours)
run_app() ```
Development
Work with a source code
```r
re-load all code after changes
devtools::load_all()
run_app() ```
Run Tests
r
devtools::test()
Run github check for package
r
usethis::use_github_action_check_standard()
Owner
- Name: AstraZeneca
- Login: AstraZeneca
- Kind: organization
- Location: Global
- Website: https://www.astrazeneca.com/
- Repositories: 33
- Profile: https://github.com/AstraZeneca
Data and AI: Unlocking new science insights
GitHub Events
Total
- Issues event: 1
- Pull request event: 2
Last Year
- Issues event: 1
- Pull request event: 2
Dependencies
- R >= 3.5.0 depends
- DT * imports
- brms * imports
- dplyr * imports
- ggeffects * imports
- ggplot2 * imports
- knitr * imports
- lme4 * imports
- modelr * imports
- pander * imports
- plotly * imports
- purrr * imports
- readxl * imports
- rlang * imports
- rmarkdown * imports
- shiny * imports
- shinyFeedback * imports
- shinyalert * imports
- shinyjs * imports
- shinytoastr * imports
- shinyvalidate * imports
- tidybayes * imports
- tidyr * imports
- tippy * imports
- vroom * imports
- waiter * imports
- lintr * suggests
- spelling * suggests
- testthat * suggests
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite