IGraph/M
IGraph/M: graph theory and network analysis for Mathematica - Published in JOSS (2023)
Science Score: 95.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 6 DOI reference(s) in README and JOSS metadata -
✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
1 of 5 committers (20.0%) from academic institutions -
○Institutional organization owner
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✓JOSS paper metadata
Published in Journal of Open Source Software
Keywords
Repository
IGraph/M is the igraph interface for Mathematica
Basic Info
- Host: GitHub
- Owner: szhorvat
- License: other
- Language: Mathematica
- Default Branch: master
- Homepage: http://szhorvat.net/mathematica/IGraphM
- Size: 261 MB
Statistics
- Stars: 95
- Watchers: 15
- Forks: 17
- Open Issues: 34
- Releases: 47
Topics
Metadata Files
README.md
IGraph/M – igraph for Mathematica
The IGraph/M package provides a Wolfram Language interface to the popular igraph network analysis and graph theory library, as well as many other useful functions for working with graphs in Mathematica. Check out the blog post for an overview.
📦 Installation
The system requirements are Mathematica 11.0 or later, 64-bit Windows/macOS/Linux, or Raspberry Pi. Note that currently the Wolfram Cloud does not support LibraryLink, therefore IGraph/M does not run on the Wolfram Cloud.
To install the package automatically, simply evaluate the following in Mathematica:
mathematica
Get["https://raw.githubusercontent.com/szhorvat/IGraphM/master/IGInstaller.m"]
IGraph/M can also be installed manually in the same way as any Mathematica application distributed as a paclet.
Download the .paclet file from the GitHub releases page, and install it using the PacletInstall function in Mathematica. For example, assuming that the file IGraphM-0.6.5.paclet was downloaded into the directory ~/Downloads, evaluate:
mathematica
Needs["PacletManager`"]
PacletInstall["~/Downloads/IGraphM-0.6.5.paclet"]
After installation, the package can now be loaded with:
mathematica
Needs["IGraphM`"]
Verify that it works by evaluating IGVersion[], then continue to the documentation with the IGDocumentation[] command.
To uninstall all currently installed versions of IGraph/M, evaluate PacletUninstall["IGraphM"]. This will remove all traces of IGraph/M from your system.
📖 Documentation
To open the documentation notebook, evaluate:
mathematica
Needs["IGraphM`"]
IGDocumentation[]
Alternatively, search for "igraphm" in Mathematica's Documentation Center.
A web-based preview is also available.
The documentation is not yet complete and contributions are very welcome. If you would like to help out with expanding the documentation, send me an email.
For additional details about functions, also check the igraph documentation pages.
🛠️ Contributions
Help wanted with editing documentation and writing unit tests! Only basic Mathematica knowledge is required for this.
Contributions to IGraph/M are very welcome! Mathematica programmers of all levels of expertise can contribute.
In order of increasing difficulty, help is needed with the following tasks:
- Just play with the package, read the documentation, and try to find problems.
- Create examples for the documentation or edit the documentation.
- Write formal unit tests.
- Implement new functions in pure Wolfram Language code.
- Expose more igraph library functions to IGraph/M (C++ knowledge required).
- Implement entirely new functions in C++.
If you are interested in contributing, send me an email for guidance. Evaluate the following in Mathematica to get my email address:
Uncompress["1:eJxTTMoPChZiYGAorsrILypLLHFIz03MzNFLzs8FAG/xCOI="]
C++ programmers should look at Development.md for additional information.
💡Additional information
🎓 Citing
If you use IGraph/M in any academic publications, please cite:
- Sz. Horvát, J. Podkalicki, G. Csárdi, T. Nepusz, V. Traag, F. Zanini, D. Noom, IGraph/M: graph theory and network analysis for Mathematica, Journal of Open Source Software, 8(81), 4899 (2023). https://doi.org/10.21105/joss.04899
⚖️ License
IGraph/M is licensed under the GNU GPLv3. See LICENSE.txt for details.
Owner
- Name: Szabolcs Horvát
- Login: szhorvat
- Kind: user
- Website: http://szhorvat.net/
- Repositories: 13
- Profile: https://github.com/szhorvat
physicist at Center for Systems Biology Dresden
JOSS Publication
IGraph/M: graph theory and network analysis for Mathematica
Authors
Max Planck Institute for Cell Biology and Genetics, Dresden, Germany \newline, Center for Systems Biology Dresden, Dresden, Germany \newline
Independent Developer, Poland \newline
RStudio \newline
Independent Developer, Hungary \newline
Centre for Science and Technology Studies, Leiden University, Leiden, Netherlands \newline
Lowy Cancer Research Centre, University of New South Wales, Kensington, NSW, Australia \newline
Independent Developer, Netherlands \newline
Editor
Prashant Jha
Tags
Wolfram Language graph theory network analysisGitHub Events
Total
- Issues event: 3
- Watch event: 5
- Issue comment event: 3
- Push event: 2
- Pull request event: 1
Last Year
- Issues event: 3
- Watch event: 5
- Issue comment event: 3
- Push event: 2
- Pull request event: 1
Committers
Last synced: 7 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Szabolcs Horvát | s****t@g****m | 1,603 |
| Kuba Podkalicki | k****d@g****m | 34 |
| The Gitter Badger | b****r@g****m | 1 |
| Szabolcs Horvat | h****t@m****l | 1 |
| Szabolcs Endre Horvat | s****t@c****u | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 101
- Total pull requests: 2
- Average time to close issues: 9 months
- Average time to close pull requests: 3 minutes
- Total issue authors: 11
- Total pull request authors: 2
- Average comments per issue: 0.91
- Average comments per pull request: 0.5
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 1
- Average time to close issues: about 3 hours
- Average time to close pull requests: N/A
- Issue authors: 2
- Pull request authors: 1
- Average comments per issue: 1.5
- Average comments per pull request: 1.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- szhorvat (89)
- Juddd (2)
- ghost (2)
- Vurgit (1)
- shubharajkharel (1)
- julioparra (1)
- lichengzhang2 (1)
- Zepeacedust (1)
- PedroSapichu (1)
- eherrmann10 (1)
- lichengzhang1 (1)
- probabilist-us (1)
Pull Request Authors
- kubaPod (2)
- gitter-badger (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
- Total downloads: unknown
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Total dependent packages: 0
(may contain duplicates) -
Total dependent repositories: 0
(may contain duplicates) - Total versions: 84
proxy.golang.org: github.com/szhorvat/IGraphM
- Documentation: https://pkg.go.dev/github.com/szhorvat/IGraphM#section-documentation
- License: other
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Latest release: v0.6.5
published about 3 years ago
Rankings
proxy.golang.org: github.com/szhorvat/igraphm
- Documentation: https://pkg.go.dev/github.com/szhorvat/igraphm#section-documentation
- License: other
-
Latest release: v0.6.5
published about 3 years ago