mixscape_seurat - v2.0.1 - Enable module usage using `github()` directive

• to enable module usage using github() directive
  • source utils.R viaparamsinstead ofsnakemake@source`
  • comment global.yaml (now requires full snakemake installation, not minimal)
• add nodefaults to all env YAML

Full Changelog: https://github.com/epigen/mixscape_seurat/compare/v2.0.0...v2.0.1

- R
Published by sreichl over 1 year ago

mixscape_seurat - v2.0.0 - Snakemake 8 compatible

Breaking change: Requires Snakemake >= v8.20.1

Full Changelog: https://github.com/epigen/mixscape_seurat/compare/v1.0.1...v2.0.0

- R
Published by sreichl over 1 year ago

mixscape_seurat - v1.0.1 - package and performance update

Updated package versions, switched to data.table::fread/fwrite, and restructured results for screens with more knockouts.

Full Changelog: https://github.com/epigen/mixscape_seurat/compare/v1.0.0...v1.0.1

- R
Published by sreichl over 2 years ago

mixscape_seurat - v1.0.0 - stable version with complete docs

The workflow performs all steps of the Mixscape Vignette on all samples in the annotation file according to the parametrization in the config file.

• Calculation of local perturbation signatures
• Mixscape classification of perturbed cells versus cells with no detectable perturbation
• Visualization of Mixscape results
• Analysis of perturbation responses with Linear Discriminant Analysis (LDA)

Full Changelog: https://github.com/epigen/mixscape_seurat/commits/v1.0.0

- R
Published by sreichl over 2 years ago