PigWeb_cross-institutes

This repository contains data and source code to reproduce the data and statistical analysis and figures in the manuscript:

"Teaming up for welfare: A cross-institute approach to identify novel and robust indicators of emotion in pigs"

Inonge Reimert(a,1), Guilherme Amorim Franchi(b,1), Marc Bagaria(c,1), Laurianne Canario(d), J. Elizabeth Bolhuis(a), Sandra Dpjan(e), Else Verbeek(f), Emma Fbrega(c), Lene Juul Pedersen(b), Helena Telknranta(g,h), Anja Eggert(e), Liza R. Moscovice(e)

(1) Authors contributed equally

(a) Adaptation Physiology Group, Department of Animal Sciences, Wageningen University and Research, Wageningen, The Netherlands

(b) Department of Animal and Veterinary Sciences, Aarhus University, Tjele, Denmark

(c) Animal Welfare Program, Institute of Agrifood Research and Technology, Monells, Spain

(d) Department of Animal Genetics, French National Institute for Agriculture, Food, and Environment, Centre de Toulouse Midi-Pyrnes, Castanet Tolosan cedex, France

(e) Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany

(f) Department of Applied Animal Science and Welfare, Swedish University of Agricultural Sciences, Uppsala, Sweden

(g) Arador Innovations, Espoo, Finland

(h) Research Centre for Animal Welfare, University of Helsinki, Helsinki, Finland

Corresponding author: Liza R. Moscovice, email: moscovice@fbn-dummerstorf.de

License

This work is licensed under a Creative Commons Attribution 4.0 International License. In order to reference this software, please consider the information in the CITATION.cff file.

Usage

We run the data and statistical analysis on Windows 11 and the described workflow is adapted to this.

This repository contains following files to reproduce the data and statistical analysis and figures in the manuscript:

Tables:

• Table 2: PigWeb-pig-attributes-hormones.qmd
• Table 3: PigWeb-physiology-descriptive-stats.qmd, PigWeb-behavior-descriptive-stats.qmd
• Table 4: PigWeb-play-escape-inactive.qmd
• Table 5: PigWeb-play-escape-inactive.qmd
• Table 6: PigWeb-ears.qmd
• Table 7: PigWeb-cortisol.qmd
• Table 8: PigWeb-pca.qmd

Figures:

• Figure 3: PigWeb-play-escape-inactive.qmd
• Figure 4: PigWeb-ears.qmd
• Figure 5: PigWeb-cortisol.qmd
• Figure 6: PigWeb-pca.qmd

Supplementary Tables:

• Supplementary Table S1: PigWeb-ears.qmd
• Supplementary Table S2: PigWeb-ears.qmd
• Supplementary Table S3: PigWeb-ears.qmd
• Supplementary Table S4: PigWeb-oxytocin.qmd
• Supplementary Table S5: PigWeb-oxytocin.qmd
• Supplementary Table S6: PigWeb-play-escape-inactive.qmd
• Supplementary Table S7: PigWeb-play-escape-inactive.qmd
• Supplementary Table S8: PigWeb-cortisol.qmd
• Supplementary Table S9: PigWeb-cortisol.qmd
• Supplementary Table S10: PigWeb-cortisol.qmd
• Supplementary Table S11: PigWeb-pca.qmd

Supplementary Figure:

• Supplementary Figure S1: PigWeb-oxytocin.qmd