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ammonyte

https://github.com/linkedearth/ammonyte

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
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    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.7%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: LinkedEarth
  • License: gpl-3.0
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 8.69 MB
Statistics
  • Stars: 5
  • Watchers: 2
  • Forks: 1
  • Open Issues: 5
  • Releases: 1
Created over 4 years ago · Last pushed almost 2 years ago
Metadata Files
Readme License Citation

README.md

DOI

Ammonyte

Python package designed for conducting non-linear time series analysis of paleoclimate data. Recommended for usage in tandem with Pyleoclim. Developed by Alexander James with the University of Southern California Climate Dynamics Lab Group. Currently under heavy construction.

Much of Ammonyte's capability is enabled by PyRQA, a tool designed to conduct recurrence analysis in a massively parallel manner. Many of our functions are essentially wrappers around PyRQA functions, so we recommend looking into that package if you're curious about the bones of how recurrence analysis is done in Ammonyte.

Install instructions:

1) It's recommended you create a new environment using anaconda before installing.

2) Inside your environment install cartopy with the command conda install -c conda-forge cartopy

3) Run pip install ammonyte

Things to note:

  • Current releases of Ammonyte are highly experimental. These are mainly done to facilitate our research, though others are welcome to use the functionality. Just be aware that the package is currently subject to constant change and will remain unstable for some time.

  • Certain functionalities such as RecurrenceNetwork and the synthetic_series utilities are currently non-functional and are acting as placeholders for features that will be included in the future.

  • This function has only been tested on macOS/Unix based operating systems, so if you encounter errors they may be system specific.

  • Raising issues/feature requests is appreciated but there is no guarantee they'll be addressed hastily at this stage of the package's development as we are focused on building core features that are of use to our lab.

Owner

  • Name: LinkedEarth
  • Login: LinkedEarth
  • Kind: organization
  • Email: linkedearth@gmail.com
  • Location: Los Angeles, CA

Citation (CITATION.cff) 

cff-version: 0.0.8
message: "If you use this software, please cite it as below."
authors:
  - family-names: "James"
    given-names: "Alexander"
    orcid: "https://orcid.org/0000-0001-8561-3188"
title: "Ammonyte: A Python package designed for conducting non-linear time series analysis of paleoclimate data."
version: v0.0.8
doi: 10.5281/zenodo.7843881
date-released: 2023-04-18
url: "https://github.com/alexkjames/Ammonyte"

GitHub Events

Total
  • Issues event: 3
  • Issue comment event: 2
  • Pull request review event: 2
  • Pull request event: 2
  • Fork event: 1
Last Year
  • Issues event: 3
  • Issue comment event: 2
  • Pull request review event: 2
  • Pull request event: 2
  • Fork event: 1

Dependencies

setup.py pypi
  • PyRQA >=8.0.0
  • numpy >=1.21.5
  • pyinform >=0.2.0
  • pyleoclim >=0.7.0
  • scipy >=1.7.1