Recent Releases of https://github.com/aswendt-lab/aidahisto
https://github.com/aswendt-lab/aidahisto - Version 1.2
What's New:
- Extended functionality to the Allen Mouse Spinal Cord Atlas. Credit goes to Ann-Sophie Benz and Annika Vohn!
You can now use AIDAhisto also for immunostainings of mouse spinal cord sections. We have created vector files from the original atlas images and assigned unique grey values to each region (including a hemisphere split). See the updated manual and TestImagesSC for details and examples.
Changes:
- Matlab/AIDAhisto_easy.m Simplifies the input of required parameters.
- MATLAB
Published by maswendt almost 4 years ago
https://github.com/aswendt-lab/aidahisto - Version 1.1
What's New:
- Python/AIDAhisto_maskSize.py This function returns the percentage of the affected regions within a brain slice both regarding the region size and the whole brain slice due to a given (lesion) mask.
Changes:
- Python/AIDAIntensity.py Now also returns the normalised intensity (sum of pixel values of a chosen color channel), normalised by the total number of pixels per ROI
- MATLAB
Published by lscharwaechter over 5 years ago
https://github.com/aswendt-lab/aidahisto - Version 1.0
MATLAB
- AIDAhisto.m
- isodataAlgorithm.m
- makeBarFilters.m
- makeSfilters.m
- readROInames.m
- run_example.m
Python
- AIDAhistoguisupport.py
- AIDAhisto_gui.py
- AIDAhisto_mapCreator.py
- AIDAhisto.py
- AIDAintensity.py
- barfilters.py
- run_example.py
- Sfilter.py
- MATLAB
Published by lscharwaechter over 5 years ago