https://github.com/aswendt-lab/aidadb

Online research database to acquire and manage preclinical experiments

https://github.com/aswendt-lab/aidadb

Repository

Online research database to acquire and manage preclinical experiments

https://github.com/Aswendt-Lab/AIDAdb/blob/master/

[1.2]: http://i.imgur.com/wWzX9uB.png
[1]: http://www.twitter.com/AswendtMarkus
[2]: https://ninoxdb.de/de/templates/research
[3]: https://academic.oup.com/database/article/doi/10.1093/database/bay124/5255128
[4]: https://github.com/maswendt/AIDAdb/blob/master/Database_Tutorialv2.m4v
[5]: https://github.com/maswendt/AIDAdb/blob/master/Database_atlas/DB_AllenReferenceAtlas.ninox
[6]: http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/annotation/
[7]: https://ninoxdb.de/en/
[8]: https://github.com/maswendt/AIDAdb/blob/master/Database/Template%20Research%20Database_v2.ninox


AIDAdb
  1. preclinical research database for data acquisistion, management and documentation 

  2. database to browse through the ontology of the Allen Mouse Brain Atlas labels. Simplifies the search for specific region numbers and lists the related parental and child regions

PART 1 - Research database
 

To use the database, create an account [here][2]. Find detailed information about the included features and how to use them in our [paper][3] and this [video tutorial][4]. Use the Import archive function to load the template [file][8].
 

PART 2 - Atlas database
 

Use the Import archive function to load the template [file][5]. This will show you all labels and their related parents/child annotations with screenshots of the Allen Mouse Brain Atlas. 
 

[
CONTACT
](https://neurologie.uk-koeln.de/forschung/ag-neuroimaging-und-neuroengineering/)
Niklas Pallast (niklas.pallast@uk-koeln.de) and 
Markus Aswendt (markus.aswendt@uk-koeln.de)[![alt text][1.2]][1]

Need help? Chat with us and find answers to FAQs in the AIDA_Tools Gitter rooms: [![Gitter](https://badges.gitter.im/AIDA_tools/community.svg)](https://gitter.im/AIDA_tools/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge)

___
Copyright

The database files were created with [Ninox software][7] (Ninox Software GmbH, Kastanienallee 32, 10435 Berlin, Germany).
Creative Commons CC BY: Video tutorial from the publication Niklas Pallast, Frederique Wieters, Marieke Nill, Gereon R Fink, Markus Aswendt, Cloud-based relational database for multimodal animal data, Database, Volume 2018, 2018, bay124, https://doi.org/10.1093/database/bay124
 2007 Allen Institute for Brain Science. Allen Mouse Brain Atlas. Available from: (https://mouse.brain-map.org)


REFERENCES

+ AIDAdb [Pallast, Niklas, et al. "Cloud-based relational database for multimodal animal data." Database 2018 (2018)](https://academic.oup.com/database/article/doi/10.1093/database/bay124/5255128)
+ Allen Brain Reference Atlas [Oh, Seung Wook, et al. "A mesoscale connectome of the mouse brain." Nature 508.7495 (2014): 207.](https://www.nature.com/articles/nature13186) and [Lein, E.S. et al. "Genome-wide atlas of gene expression in the adult mouse brain" Nature 445: 168-176 (2007)](https://www.nature.com/articles/nature05453).