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Recent Releases of https://github.com/australianbiocommons/acdc-schema-json

https://github.com/australianbiocommons/acdc-schema-json - v0.4.7

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.4.6...v0.4.7 dictionary now v0.4.7 reordered so that core metadata is always a secondary link not first, links to files were broken in previous version because core metadata was primary link. This has submission ready synthetic data


Published by JoshuaHarris391 about 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.4.6

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.4.5...v0.4.6

Release Notes – v0.4.6

Date: 23 June 2025

Added • New schema tag: v0.4.6 • Initial synthetic dataset generated and indexed (indexd) • Data packages prepared and staged for upload

Changed • Demographics-to-timepoint link is now required in the schema • Lowered the quantity of synthetic records to accelerate data-ops workflows

Ready for Action • All assets have passed validation and are ready to be pushed to gen3


Published by JoshuaHarris391 about 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.4.5

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.4.4...v0.4.5

changed timepoint property label (invalid) to timepoint_label. Synthdata generated ready for upload, schema tagged with v0.4.5

This release is intended for testing the timepoint entity


Published by JoshuaHarris391 about 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.4.4

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.4.3...v0.4.4

Added

  • timepoint node added to the data model.

Changed

  • Fields data_format, data_type, and data_category are now required.
  • In this release, the schema is pulled from this google sheet

Data

  • Synthetic data has been generated and is ready for upload.


Published by JoshuaHarris391 about 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.4.3

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.4.1...v0.4.3

Note: accidently cut 0.4.2 release in acdc-schema-json so skipping straight to 0.4.3 Changed all properties to NOT required, data compatible with v0.4.0


Published by JoshuaHarris391 about 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.4.2

Full Changelog: https://github.com/AustralianBioCommons/acdc-schema-json/compare/v0.4.0...v0.4.2

Changed all properties to NOT required, data compatible with v0.4.0


Published by JoshuaHarris391 about 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.4.1

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.4.0...v0.4.1

removed null string from enums, this schema is compatible with data from v0.4.0


Published by JoshuaHarris391 about 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.4.0-synthdata

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.4.0...v0.4.0-synthdata

Same schema as v0.4.0 but with no-null values allowed for the purpose of generated synthetic data. DO NOT deploy the schema from this release, use the synthetic data from this release with release v0.4.0.

The synthetic data here has been indexed and ready for upload.


Published by JoshuaHarris391 about 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.4.0

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.3.9...v0.4.0

This schema allows null values in addition to other data types. No synthetic data with this release, the synthetic data will be in the next matching release.


Published by JoshuaHarris391 about 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.3.9

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.3.8...v0.3.9

  • added null as option to string values
  • made synthetic data, still need to update with indexd values


Published by JoshuaHarris391 about 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.3.8

v0.3.8

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.3.7...v0.3.8

  • Removed timepoint data node for now until we can figure out how to fix it
  • Fixed mass spec enums for data types across all mass spec methods
  • this version contains indexd updated synthetic metadata that is ready for upload
  • Added script to manually update schema version


Published by JoshuaHarris391 over 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.3.7

Changed -70 enum to -80

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.3.6...v0.3.7


Published by JoshuaHarris391 over 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.3.6

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.3.5...v0.3.6

Release Notes

[Version 0.3.6] - 2025-02-27

Added

  • Added timepoint node
  • Added assay_ids to assay nodes
  • Removed lipid map data type
  • Removed alternate and baseline timepoint properties in entities


Published by JoshuaHarris391 over 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.3.5

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.3.4...v0.3.5

Release Notes

[Version 0.3.5] - 2025-02-26

Added

  • added timepoint entity, updated properties, and links for this entity
  • Also has synthetic data ready for upload


Published by JoshuaHarris391 over 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.3.4

Release Notes

[Version 0.3.4] - 2025-02-26

Added

  • added timepoint entity, updated properties, and links for this entity

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.3.3...v0.3.4


Published by JoshuaHarris391 over 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.3.3

Release Notes

[Version 0.3.3] - 2025-02-18

Note: Same as v0.3.2 Just added resolved schema to github workflow

Changed

  • Renamed diabetes_measured to diabetes_reported.
  • Renamed diabetesmeasuredICD10 to diabetesreportedICD10.

Updated

  • Revised EGFR variable descriptions to clarify that values of 90 represent measurements that were 90 or greater.

Added

  • Introduced drinksperweek_string variable to accommodate non-integer questionnaire responses.

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.3.1...v0.3.3


Published by JoshuaHarris391 over 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.3.2

Release Notes

[Version 0.3.2] - 2025-02-18

Changed

  • Renamed diabetes_measured to diabetes_reported.
  • Renamed diabetesmeasuredICD10 to diabetesreportedICD10.

Updated

  • Revised EGFR variable descriptions to clarify that values of 90 represent measurements that were 90 or greater.

Added

  • Introduced drinksperweek_string variable to accommodate non-integer questionnaire responses.

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.3.1...v0.3.2


Published by JoshuaHarris391 over 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.3.1

📢 Data Dictionary Update - Release v0.3.1

Note: Same as v0.2.3, just testing GitHub workflow to acdc-schema-json

🆕 New Variables Added

  • prematurecvdfamily_history: Captures data on premature cardiovascular disease (CVD) family history.
  • diabetes_measured: New variable for measured diabetes status.
  • ICD-10 Coded Variables:
    • hypertensionmeasuredICD10
    • diabetesmeasuredICD10
    • diabetestypeICD10
    • cvdreportedICD10
    • cvddeathICD10
    • cvdnonfatal10year_ICD10

📁 Project Metadata Enhancements

  • Manually Defined Project Metadata: Each simulated project now includes manually defined metadata, improving project-level data organization and standardization.
  • Metadata Updates & Validation:
    • Metadata has been updated with Indexd GUIDs for structured data tracking.
    • Metadata has been tested and validated for correctness.
    • Metadata is now ready for upload to the platform.

This update enhances data structure consistency and usability for CVD and related disease research.

Full Changelog: Compare v0.2.2...v0.2.3


Published by JoshuaHarris391 over 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.3.0

📢 Data Dictionary Update - Release v0.3.0

Note: Same as v0.2.3, just testing GitHub workflow to acdc-schema-json

🆕 New Variables Added

  • prematurecvdfamily_history: Captures data on premature cardiovascular disease (CVD) family history.
  • diabetes_measured: New variable for measured diabetes status.
  • ICD-10 Coded Variables:
    • hypertensionmeasuredICD10
    • diabetesmeasuredICD10
    • diabetestypeICD10
    • cvdreportedICD10
    • cvddeathICD10
    • cvdnonfatal10year_ICD10

📁 Project Metadata Enhancements

  • Manually Defined Project Metadata: Each simulated project now includes manually defined metadata, improving project-level data organization and standardization.
  • Metadata Updates & Validation:
    • Metadata has been updated with Indexd GUIDs for structured data tracking.
    • Metadata has been tested and validated for correctness.
    • Metadata is now ready for upload to the platform.

This update enhances data structure consistency and usability for CVD and related disease research.

Full Changelog: Compare v0.2.2...v0.2.3


Published by JoshuaHarris391 over 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.2.8

📢 Data Dictionary Update - Release v0.2.8

Note: Same as v.0.2.3 just testing github workflow to acdc-schema-json

🆕 New Variables Added

  • ****: Captures data on premature cardiovascular disease (CVD) family history.
  • ****: New variable for measured diabetes status.
  • ICD-10 Coded Variables:

    -

    -

    -

📁 Project Metadata Enhancements

  • Manually Defined Project Metadata: Each simulated project now includes manually defined metadata, improving project-level data organization and standardization.
  • Metadata Updates & Validation:
    • Metadata has been updated with Indexd GUIDs for structured data tracking.
    • Metadata has been tested and validated for correctness.
    • Metadata is now ready for upload to the platform.

This update enhances data structure consistency and usability for CVD and related disease research.

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.2.2...v0.2.3


Published by JoshuaHarris391 over 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.2.7

📢 Data Dictionary Update - Release v0.2.7

Note: Same as v.0.2.3 just testing github workflow to acdc-schema-json

🆕 New Variables Added

  • premature_cvd_family_history: Captures data on premature cardiovascular disease (CVD) family history.
  • diabetes_measured: New variable for measured diabetes status.
  • ICD-10 Coded Variables:
    • hypertension_measured_ICD10
    • diabetes_measured_ICD10
    • diabetes_type_ICD10
    • cvd_reported_ICD10
    • cvd_death_ICD10
    • cvd_non_fatal_10_year_ICD10

📁 Project Metadata Enhancements

  • Manually Defined Project Metadata: Each simulated project now includes manually defined metadata, improving project-level data organization and standardization.
  • Metadata Updates & Validation:
    • Metadata has been updated with Indexd GUIDs for structured data tracking.
    • Metadata has been tested and validated for correctness.
    • Metadata is now ready for upload to the platform.

This update enhances data structure consistency and usability for CVD and related disease research.

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.2.2...v0.2.3


Published by JoshuaHarris391 over 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.2.6

📢 Data Dictionary Update - Release v0.2.6

Note: Same as v.0.2.3 just testing github workflow to acdc-schema-json

🆕 New Variables Added

  • ****: Captures data on premature cardiovascular disease (CVD) family history.
  • ****: New variable for measured diabetes status.
  • ICD-10 Coded Variables:

    -

    -

    -

📁 Project Metadata Enhancements

  • Manually Defined Project Metadata: Each simulated project now includes manually defined metadata, improving project-level data organization and standardization.
  • Metadata Updates & Validation:
    • Metadata has been updated with Indexd GUIDs for structured data tracking.
    • Metadata has been tested and validated for correctness.
    • Metadata is now ready for upload to the platform.

This update enhances data structure consistency and usability for CVD and related disease research.

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.2.2...v0.2.3


Published by JoshuaHarris391 over 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.2.5

📢 Data Dictionary Update - Release v0.2.5

Note: Same as v.0.2.3 just testing github workflow to acdc-schema-json

🆕 New Variables Added

  • premature_cvd_family_history: Captures data on premature cardiovascular disease (CVD) family history.
  • diabetes_measured: New variable for measured diabetes status.
  • ICD-10 Coded Variables:
    • hypertension_measured_ICD10
    • diabetes_measured_ICD10
    • diabetes_type_ICD10
    • cvd_reported_ICD10
    • cvd_death_ICD10
    • cvd_non_fatal_10_year_ICD10

📁 Project Metadata Enhancements

  • Manually Defined Project Metadata: Each simulated project now includes manually defined metadata, improving project-level data organization and standardization.
  • Metadata Updates & Validation:
    • Metadata has been updated with Indexd GUIDs for structured data tracking.
    • Metadata has been tested and validated for correctness.
    • Metadata is now ready for upload to the platform.

This update enhances data structure consistency and usability for CVD and related disease research.

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.2.2...v0.2.3


Published by JoshuaHarris391 over 1 year ago

https://github.com/australianbiocommons/acdc-schema-json - v0.2.3

📢 Data Dictionary Update - Release v0.2.3

🆕 New Variables Added

  • premature_cvd_family_history: Captures data on premature cardiovascular disease (CVD) family history.
  • diabetes_measured: New variable for measured diabetes status.
  • ICD-10 Coded Variables:
    • hypertension_measured_ICD10
    • diabetes_measured_ICD10
    • diabetes_type_ICD10
    • cvd_reported_ICD10
    • cvd_death_ICD10
    • cvd_non_fatal_10_year_ICD10

📁 Project Metadata Enhancements

  • Manually Defined Project Metadata: Each simulated project now includes manually defined metadata, improving project-level data organization and standardization.
  • Metadata Updates & Validation:
    • Metadata has been updated with Indexd GUIDs for structured data tracking.
    • Metadata has been tested and validated for correctness.
    • Metadata is now ready for upload to the platform.

This update enhances data structure consistency and usability for CVD and related disease research.

Full Changelog: https://github.com/AustralianBioCommons/ACDCSchemaDev/compare/v0.2.2...v0.2.3


Published by JoshuaHarris391 over 1 year ago