https://github.com/australianbiocommons/human-omics-data-sharing-field-guide
Prototype for Human Genomics Data Sharing Field Guide Website
https://github.com/australianbiocommons/human-omics-data-sharing-field-guide
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.4%) to scientific vocabulary
Keywords
Repository
Prototype for Human Genomics Data Sharing Field Guide Website
Basic Info
- Host: GitHub
- Owner: AustralianBioCommons
- License: mit
- Language: TeX
- Default Branch: main
- Homepage: https://australianbiocommons.github.io/human-omics-data-sharing-field-guide/
- Size: 10.6 MB
Statistics
- Stars: 2
- Watchers: 5
- Forks: 4
- Open Issues: 1
- Releases: 0
Topics
Metadata Files
README.md
Australian BioCommons Human 'Omics Field Guide
A prototype website for the WIP Human 'Omics Field Guide.
Any suggestions or contributions are most welcome!
Abstract
Human Genomics data sharing is an increasingly complex task. Researchers need to juggle legal, ethical and intellectual requirements, along with publishing and funding responsibilities. Although the majority of researchers want to do the right thing, navigating the maze of data, tool, workflow and protocol repositories; software, protocol, metadata and infrastructure standards is not an easy task. Let alone staying up to date with major genome projects and support agencies that can help them on their quest. The Human Genomics Data Sharing Field guide seeks to provide a comprehensive resource that gathers together essential information on a broad range of topics to help Australian researchers on their genomics data sharing journey.
Deployment
The website is deployed using GitHub actions defined in the workflow here: github-pages.yml
The action is run each time a new commit is pushed to the GitHub repository.
The actions perform three things:
1. Extract references from the group Zotero library and save it to the _bibliography folder as references.bib
2. Builds the website using Ruby/Jekyll, converting all the markdown files to html
3. Deploys the website
Owner
- Name: AustralianBioCommons
- Login: AustralianBioCommons
- Kind: organization
- Email: systems@biocommons.org.au
- Website: https://www.biocommons.org.au/
- Repositories: 17
- Profile: https://github.com/AustralianBioCommons
Documentation for the development, deployment and/or optimisation of key community-endorsed bioinformatics tools and workflows
GitHub Events
Total
- Issues event: 1
- Watch event: 1
- Delete event: 3
- Member event: 1
- Push event: 22
- Pull request review event: 1
- Pull request event: 12
- Create event: 4
Last Year
- Issues event: 1
- Watch event: 1
- Delete event: 3
- Member event: 1
- Push event: 22
- Pull request review event: 1
- Pull request event: 12
- Create event: 4
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 0
- Total pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: 16 minutes
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: 16 minutes
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- JoshuaHarris391 (1)
- delocalizer (1)
Pull Request Authors
- delocalizer (5)
- s3731231 (3)
- JoshuaHarris391 (1)
- irenehung3 (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- github-pages >= 0
- actions/cache v2 composite
- actions/checkout v3 composite
- actions/setup-python v2 composite
- ad-m/github-push-action v0.6.0 composite
- jeffreytse/jekyll-deploy-action v0.4.0 composite
- PyYAML *
- argparse *
- pandas *
- python-frontmatter *
- requests *
- urllib3 *