https://github.com/australianbiocommons/acdc_deposit
Simple repository to facilitate preparation of data prior to data transfer for the Australian Cardiovascular disease Data Commons
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.3%) to scientific vocabulary
Repository
Simple repository to facilitate preparation of data prior to data transfer for the Australian Cardiovascular disease Data Commons
Basic Info
- Host: GitHub
- Owner: AustralianBioCommons
- License: apache-2.0
- Language: Shell
- Default Branch: main
- Size: 11.7 KB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 1
- Releases: 0
Metadata Files
README.md
acdc_deposit
Simple repository to facilitate preparation of data prior to data transfer for the Australian Cardiovascular disease Data Commons
Usage
Clone repo:
sh git clone https://github.com/AustralianBioCommons/acdc_deposit.gitCreate a directory structure for a study with ID
AusDiab:sh bash create_template.sh -s AusDiab
To create the directory structure in a custom destination run:
sh
bash create_template.sh -s AusDiab -o path/to/target/dest
This will create a directory named YYYY-MM-DD_AusDiab_ACDC_Data_Transfer (where YYYY-MM-DD is the current date).
Options
-s STUDY_ID: The study identifier used to name the root directory. This is a required argument.-o OUTPUT_DIR: Specify the output directory where the structure will be created. Default is the current directory.
Directory Structure
The script will create the following directory structure:
YYYY-MM-DD_STUDY_ID_ACDC_Data_Transfer/
├── clinical/
├── genomic/
├── imaging/
├── lipidomic/
├── metabolomic/
├── proteomic/
├── study/
└── study/data_dictionaries/
Manifest File
A manifest.tsv file will be created in the root directory with the following header:
study_id subject_id file_path file_name data_category file_size md5_hash
License
This project is licensed under the Apache License 2.0 - see the LICENSE file for details.
Owner
- Name: AustralianBioCommons
- Login: AustralianBioCommons
- Kind: organization
- Email: systems@biocommons.org.au
- Website: https://www.biocommons.org.au/
- Repositories: 17
- Profile: https://github.com/AustralianBioCommons
Documentation for the development, deployment and/or optimisation of key community-endorsed bioinformatics tools and workflows
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