https://github.com/australiancancerdatanetwork/omop_alchemy
SQLAlchemy models for OHDSI OMOP Common Data Model
Science Score: 26.0%
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○CITATION.cff file
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○Scientific vocabulary similarity
Low similarity (5.7%) to scientific vocabulary
Repository
SQLAlchemy models for OHDSI OMOP Common Data Model
Basic Info
- Host: GitHub
- Owner: AustralianCancerDataNetwork
- Language: Python
- Default Branch: main
- Size: 435 KB
Statistics
- Stars: 8
- Watchers: 2
- Forks: 2
- Open Issues: 1
- Releases: 0
Metadata Files
README.md
OMOP Alchemy
Purpose: to provide an oncology-extension focused implementation of SQLAlchemy ORM definitions with opinionated enforcement of data conventions.
For reference, see background 2023 OHDSI APAC symposium paper.
Notes
If you don't want to install and configure a sagecipher keyring for credential management, you can instead create file pwd_override.txt under oaconfig.approot, containing just plaintext password, which will override the keyring functionality.
Create oa_system_config.yaml in this same directory to specify your local or system database parameters for connection. oa_system_config_demo.yaml has been provided as a template example.
Owner
- Name: Australian Cancer Data Network
- Login: AustralianCancerDataNetwork
- Kind: organization
- Email: Tim.Churches@inghaminstitute.org.au
- Location: Australia
- Website: https://australian-cancer-data.network
- Repositories: 2
- Profile: https://github.com/AustralianCancerDataNetwork
GitHub Events
Total
- Issues event: 1
- Watch event: 1
- Push event: 13
Last Year
- Issues event: 1
- Watch event: 1
- Push event: 13
Dependencies
- ipykernel ^6.29.0 develop
- pytest ^8.0.0 develop
- sphinx ^7.2.6 develop
- SQLAlchemy ^2.0.25
- python ^3.11