https://github.com/avallecam/hemogr
Analysis code for the manuscript "Hematological profiles in patients infected with malaria in an endemic area of Peru"
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.3%) to scientific vocabulary
Keywords
Repository
Analysis code for the manuscript "Hematological profiles in patients infected with malaria in an endemic area of Peru"
Basic Info
- Host: GitHub
- Owner: avallecam
- Language: R
- Default Branch: master
- Homepage: https://doi.org/10.17843/rpmesp.2022.393.11908
- Size: 83 KB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
haematological profile of malaria patients
project structure
hemo_db.R-> import and cleaninghemo_bygroup.R-> cross-sectional analysis using baseline datahemo_byvisit.R-> longitudinal analysis using folow-ups!
método: analisis longitudinal
- definir variable dependiente
- Var. dependiente = cada una de las mediciones hematológicas
- Y: gaussian distribution identity link function
- definir variables independientes
- Var. independiente [time-invariant] = infeccion (especie de plasmodium, dicotomica)
- Var. independiente [confusores] = edad (continua), sexo (dicotómica)
- objetivo:
- test if, in average, the change of Y in time is related with a time-invariant exposure
- this translates as including an interaction term between Y and the time-invariant exposure (Vittinghoff, 2nd edition, p271)
correlation structure
- the repeated measurements were taken through time
- only three time measurements per pacient were included
- the measurement interval times are not equally spaced
- autoregressive process 1 (ar1) because the correlation between times differ
clustered data
- each pacient had 3 visits each with one measurement for all the haematological variables
- dataset is in a long (tidy) format
historial
20180103
recepción de las bases
estructura:
- Controles (n=308) del año 2010
- Pf positivos (n=34) años 2011 y 2012
- Pv positivos (n=93) año 2011
20181201
- importar y limpiar base de datos
20190506
- union de base de datos y ejecución de análisis descriptivos
20200204
- corrección por autocorrelación debido a mediciones repetidas
citar
@software{andree_valle_campos_2020_4014205,
author = {Andree Valle Campos},
title = {avallecam/hemogr: First release},
month = sep,
year = 2020,
publisher = {Zenodo},
version = {v0.1},
doi = {10.5281/zenodo.4014205},
url = {https://doi.org/10.5281/zenodo.4014205}
}
Owner
- Name: Andree Valle Campos
- Login: avallecam
- Kind: user
- Location: Lima, Perú
- Website: https://avallecam.github.io/
- Twitter: avallecam
- Repositories: 3
- Profile: https://github.com/avallecam
pron: él/he/his, peruano, tusán.
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