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histoc

histoc: Histocompatibility analysis performed by kidney allocation systems - Published in JOSS (2022)

https://github.com/txopen/histoc

Science Score: 93.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README and JOSS metadata
  • ✓
    Academic publication links
    Links to: joss.theoj.org, zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ✓
    JOSS paper metadata
    Published in Journal of Open Source Software

Scientific Fields

Engineering Computer Science - 40% confidence
Last synced: 6 months ago · JSON representation

Repository

Histocompatibility analysis performed by kidney allocation systems for transplantation

Basic Info
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 1
Created over 3 years ago · Last pushed over 2 years ago
Metadata Files
Readme Changelog License

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# histoc 



[![R-CMD-check](https://github.com/txopen/histoc/workflows/R-CMD-check/badge.svg)](https://github.com/txopen/histoc/actions)
[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
[![Last Commit Date](https://img.shields.io/github/last-commit/txopen/histoc.svg)](https://github.com/txopen/histoc/commits/main)
[![](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
[![Codecov test coverage](https://codecov.io/gh/txopen/histoc/branch/main/graph/badge.svg)](https://app.codecov.io/gh/txopen/histoc?branch=main)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7338242.svg)](https://doi.org/10.5281/zenodo.7338242)
[![status](https://joss.theoj.org/papers/1913c20af5e50aa41711781623339c90/status.svg)](https://joss.theoj.org/papers/1913c20af5e50aa41711781623339c90)


`histoc` is a package for histocompatibility analysis performed on kidney transplantation in allocation systems. 
A description of how to use it can be found [here](https://txopen.github.io/histoc/).

`histoc` provides functions to test compatibility between organ donors and transplant candidates, allowing to simulate different kidney transplant allocation systems.

> :warning: This package is not a medical device and should not be used for clinical decision-making.

## Installation

### Development version 

The development version can be installed from GitHub. Alongside the latest features you might also get a couple of bugs:exclamation:  

```
# install from GitHub
devtools::install_github("txopen/histoc")
```

## Bug reports and contributions

Reports on any bug encountered or any request for a new feature, are welcomed with a minimal reproducible example of your R code through the link: [report a bug](https://github.com/txopen/histoc/issues).

Owner

  • Name: TxOR
  • Login: txopen
  • Kind: user

JOSS Publication

histoc: Histocompatibility analysis performed by kidney allocation systems
Published
December 05, 2022
DOI
Volume 7, Issue 80, Page 4807
Authors
Bruno A. Lima ORCID
Oficina de Bioestatistica, Ermesinde, Portugal
Filipe P. Reis ORCID
Oficina de Bioestatistica, Ermesinde, Portugal
Editor
Chris Vernon ORCID
Tags
transplantation kidney allocation
View PDF Review Thread Software Archive

GitHub Events

Total
Last Year

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 111
  • Total Committers: 5
  • Avg Commits per committer: 22.2
  • Development Distribution Score (DDS): 0.495
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Filipe Pinto Reis f****s@g****m 56
Bruno Lima b****8@g****m 47
Bruno Lima b****a@i****t 4
TxOR 1****n 3
crvernon c****n@g****m 1
Committer Domains (Top 20 + Academic)
ine.pt: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 38
  • Average time to close issues: N/A
  • Average time to close pull requests: about 19 hours
  • Total issue authors: 0
  • Total pull request authors: 4
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 37
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • balima78 (25)
  • FilipePintoReis (8)
  • txopen (3)
  • crvernon (1)
Top Labels
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Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/check-r-package v1 composite
  • r-lib/actions/setup-pandoc v1 composite
  • r-lib/actions/setup-r v1 composite
  • r-lib/actions/setup-r-dependencies v1 composite
.github/workflows/draft-pdf.yml actions
  • actions/checkout v2 composite
  • actions/upload-artifact v1 composite
  • openjournals/openjournals-draft-action master composite
.github/workflows/pkgdown.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc v1 composite
  • r-lib/actions/setup-r v1 composite
  • r-lib/actions/setup-r-dependencies v1 composite
.github/workflows/test-coverage.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • R >= 4.1.0 depends
  • data.table * imports
  • dplyr * imports
  • magrittr * imports
  • mockr * imports
  • purrr * imports
  • rlang * imports
  • stringr * imports
  • tibble * imports
  • tidyr * imports
  • utils * imports
  • covr * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • testthat >= 3.0.0 suggests