covid-campus-phylodynamics - COVID-19 On Campus VS Off Campus Transmission: Data & Code

COVID-19 On Campus VS Off Campus Transmission: Data & Code

🔬 Overview This release contains the data, scripts, and analysis used in our study: "On-Campus Dormitories as Viral Transmission Sinks: Phylodynamic Insights into Student Housing Networks During the COVID-19 Pandemic."

We analyzed 1,431 SARS-CoV-2 genomes from students residing on and off campus at the University of North Carolina at Charlotte (UNCC) between September 2020 and May 2022. Using Bayesian phylodynamic and ancestral state reconstruction with BEAST, we traced viral transmission pathways to determine the directionality of spread between residential settings.

📂 What's Included

✔️ Notebooks/ – Jupyter notebooks for data exploration & visualization

✔️ Scripts/ – Python, Bash, and R scripts for processing and analysis

✔️ Data/ – Example datasets (or links to external repositories)

- Jupyter Notebook
Published by jbolanos93 over 1 year ago

covid-campus-phylodynamics - COVID-19 On Campus VS Off Campus Transmission: Data & Code – v1.0

🔬 Overview This release contains the data, scripts, and analysis used in our study: "On-Campus Dormitories as Viral Transmission Sinks: Phylodynamic Insights into Student Housing Networks During the COVID-19 Pandemic."

We analyzed 1,431 SARS-CoV-2 genomes from students residing on and off campus at the University of North Carolina at Charlotte (UNCC) between September 2020 and May 2022. Using Bayesian phylodynamic and ancestral state reconstruction with BEAST, we traced viral transmission pathways to determine the directionality of spread between residential settings.

📂 What's Included ✔️ Notebooks/ – Jupyter notebooks for data exploration & visualization ✔️ Scripts/ – Python, Bash, and R scripts for processing and analysis ✔️ Data/ – Example datasets (or links to external repositories) ✔️ Results/ – Figures, tables, and summary statistics ✔️ Documentation/ – Instructions for running the analysis

- Jupyter Notebook
Published by jbolanos93 over 1 year ago