https://github.com/avik-pal/stochasticdiffeq.jl

Solvers for stochastic differential equations which connect with the scientific machine learning (SciML) ecosystem

https://github.com/avik-pal/stochasticdiffeq.jl

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Solvers for stochastic differential equations which connect with the scientific machine learning (SciML) ecosystem

Basic Info
  • Host: GitHub
  • Owner: avik-pal
  • License: other
  • Language: Julia
  • Default Branch: master
  • Homepage:
  • Size: 2.4 MB
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README.md

StochasticDiffEq.jl

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StochasticDiffEq.jl is a component package in the DifferentialEquations ecosystem. It holds the stochastic differential equations solvers and utilities. While completely independent and usable on its own, users interested in using this functionality should check out DifferentialEquations.jl.

API

StochasticDiffEq.jl is part of the JuliaDiffEq common interface, but can be used independently of DifferentialEquations.jl. The only requirement is that the user passes an StochasticDiffEq.jl algorithm to solve. For example, we can solve the SDE tutorial from the docs using the SRIW1() algorithm:

julia using StochasticDiffEq α=1 β=1 u₀=1/2 f(u,p,t) = α*u g(u,p,t) = β*u dt = 1//2^(4) tspan = (0.0,1.0) prob = SDEProblem(f,g,u₀,(0.0,1.0)) sol =solve(prob,SRIW1())

The options for solve are defined in the common solver options page and are thoroughly explained in the ODE tutorial.

That example uses the out-of-place syntax f(u,p,t), while the inplace syntax (more efficient for systems of equations) is shown in the Lorenz example:

```julia function lorenz(du,u,p,t) du[1] = 10.0(u[2]-u[1]) du[2] = u[1](28.0-u[3]) - u[2] du[3] = u[1]u[2] - (8/3)*u[3] end

function σ_lorenz(du,u,p,t) du[1] = 3.0 du[2] = 3.0 du[3] = 3.0 end

probsdelorenz = SDEProblem(lorenz,σlorenz,[1.0,0.0,0.0],(0.0,10.0)) sol = solve(probsde_lorenz) plot(sol,vars=(1,2,3)) ```

The problems default to diagonal noise. Non-diagonal noise can be added by setting the noise_prototype:

julia f = (du,u,p,t) -> du.=1.01u g = function (du,u,p,t) du[1,1] = 0.3u[1] du[1,2] = 0.6u[1] du[1,3] = 0.9u[1] du[1,4] = 0.12u[2] du[2,1] = 1.2u[1] du[2,2] = 0.2u[2] du[2,3] = 0.3u[2] du[2,4] = 1.8u[2] end prob = SDEProblem(f,g,ones(2),(0.0,1.0),noise_rate_prototype=zeros(2,4))

Colored noise can be set using an AbstractNoiseProcess. For example, we can set the underlying noise process to a GeometricBrownianMotionProcess via:

```julia μ = 1.0 σ = 2.0 W = GeometricBrownianMotionProcess(μ,σ,0.0,1.0,1.0)

...

Define f,g,u0,tspan for a SDEProblem

...

prob = SDEProblem(f,g,u0,tspan,noise=W) ```

StochasticDiffEq.jl also handles solving random ordinary differential equations. This is shown in the RODE tutorial.

julia using StochasticDiffEq function f(u,p,t,W) 2u*sin(W) end u0 = 1.00 tspan = (0.0,5.0) prob = RODEProblem(f,u0,tspan) sol = solve(prob,RandomEM(),dt=1/100)

Available Solvers

For the list of available solvers, please refer to the DifferentialEquations.jl SDE Solvers page and the RODE Solvers page.

Owner

  • Name: Avik Pal
  • Login: avik-pal
  • Kind: user
  • Location: Cambridge, MA
  • Company: Massachusetts Institute of Technology

PhD Student @mit || Prev: BTech CSE IITK

Citation (CITATION.bib)

@article{DifferentialEquations.jl-2017,
 author = {Rackauckas, Christopher and Nie, Qing},
 doi = {10.5334/jors.151},
 journal = {The Journal of Open Research Software},
 keywords = {Applied Mathematics},
 note = {Exported from https://app.dimensions.ai on 2019/05/05},
 number = {1},
 pages = {},
 title = {DifferentialEquations.jl – A Performant and Feature-Rich Ecosystem for Solving Differential Equations in Julia},
 url = {https://app.dimensions.ai/details/publication/pub.1085583166 and http://openresearchsoftware.metajnl.com/articles/10.5334/jors.151/galley/245/download/},
 volume = {5},
 year = {2017}
}

@article{rackauckas2017adaptive,
  title={Adaptive methods for stochastic differential equations via natural embeddings and rejection sampling with memory},
  author={Rackauckas, Christopher and Nie, Qing},
  journal={Discrete and continuous dynamical systems. Series B},
  volume={22},
  number={7},
  pages={2731},
  year={2017},
  publisher={NIH Public Access}
}

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