https://github.com/axondeepseg/model_seg_unmyelinated_tem
Model for unmyelinated axon segmentation in TEM images, based on nnUNet
Science Score: 26.0%
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○Scientific vocabulary similarity
Low similarity (4.1%) to scientific vocabulary
Repository
Model for unmyelinated axon segmentation in TEM images, based on nnUNet
Basic Info
- Host: GitHub
- Owner: axondeepseg
- License: mit
- Language: Python
- Default Branch: main
- Size: 3.54 MB
Statistics
- Stars: 1
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 3
Metadata Files
README.md
modelsegunmyelinated_tem
Model for unmyelinated axon segmentation in TEM images, based on nnUNetv2.
Model overview
TODO image and description
Usage
To use the checkpoints provided in this repository, please see this temporary solution: https://github.com/axondeepseg/nn-axondeepseg.
Data
The datasets can be found in the NeuroPoly internal data server. Look for datasets/data_axondeepseg_sickkids and data_axondeepseg_stanford.
TODO show how to use script to preprocess data
Training
For more detailed information on the training pipelines, see the sickkids_pipeline and stanford_pipeline folders.
Owner
- Name: AxonDeepSeg
- Login: axondeepseg
- Kind: organization
- Location: Canada
- Website: https://axondeepseg.readthedocs.io/en/latest/
- Twitter: AxonDeepSeg
- Repositories: 25
- Profile: https://github.com/axondeepseg
Segmentation software for microscopy data of nerve fibers based on deep learning.
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Last Year
- Push event: 8