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Open Source Science

https://github.com/axsk/gync.jl

Bayesian inference for the GynCycle model

https://github.com/axsk/gync.jl

Science Score: 13.0%

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    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
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    DOI references
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    Scientific vocabulary similarity
    Low similarity (6.7%) to scientific vocabulary

Keywords

bayesian-inference empirical-bayes mcmc paper zib
Last synced: 5 months ago · JSON representation

Repository

Bayesian inference for the GynCycle model

Basic Info
  • Host: GitHub
  • Owner: axsk
  • Language: Julia
  • Default Branch: master
  • Homepage:
  • Size: 106 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 5
  • Releases: 0
Topics
bayesian-inference empirical-bayes mcmc paper zib
Created over 10 years ago · Last pushed over 8 years ago
Metadata Files
Readme

README.md

GynC.jl

Build Status codecov.io

This package provides the toolchain to estimate the parameters of the GynCycle model.

Its code mainly revolves around the three main types:

  • Config which stores the bayesian model configuration, i.e. the patient data, measurement error, priors, ... as well as the MCMC proposal density and the thinning.
  • Sampling which is obtained by sampling from a config via sample(::Config, iters) containing the sampled points, the current sampler state, as well as a reference to its initial config.
  • WeightedChain which can be constructed from multiple samplings via WeightedChain(::Vector{Sampling}) representing the average/merged chain and is used for further prior estimation steps, for example the EM-iteration: emiteration!(::WeightedChain)

Owner

  • Name: Alexander
  • Login: axsk
  • Kind: user
  • Location: Berlin
  • Company: Zuse Institute Berlin

Mathematician

GitHub Events

Total
Last Year

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 357
  • Total Committers: 2
  • Avg Commits per committer: 178.5
  • Development Distribution Score (DDS): 0.003
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
axsk s****3@g****m 356
Sikorski b****r@n****e 1
Committer Domains (Top 20 + Academic)
num-pc29.zib.de: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 11
  • Total pull requests: 0
  • Average time to close issues: 10 months
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 1.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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Top Authors
Issue Authors
  • axsk (11)
Pull Request Authors
Top Labels
Issue Labels
code (3) enhancement (2) model (2) help wanted (2) todo (1) question (1)
Pull Request Labels