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4dflowpwvtool

a Matlab-based 4D flow MRI tool for measuring pulse wave velocity in the aorta

https://github.com/schrau24/4dflowpwvtool

Science Score: 57.0%

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Repository

a Matlab-based 4D flow MRI tool for measuring pulse wave velocity in the aorta

Basic Info
  • Host: GitHub
  • Owner: schrau24
  • Language: MATLAB
  • Default Branch: master
  • Homepage:
  • Size: 183 MB
Statistics
  • Stars: 6
  • Watchers: 1
  • Forks: 4
  • Open Issues: 0
  • Releases: 0
Created over 5 years ago · Last pushed almost 2 years ago
Metadata Files
Readme Citation

README.md

4DFlowPWVTool

NOTE: This repository is deprecated and no longer supported. For current support of PWV code, with additions for visualization, please see the FlowProcessing tool.

a Matlab-based app for 4D flow MRI measurement of pulse wave velocity

This tool is based off a previously published post-processing software. Use of this tool should be associated and cited with the following reference: E. Schrauben, A. Wåhlin, K. Ambarki, E. Spaak, J. Malm, O. Wieben, A. Eklund. “Fast 4D flow MRI intracranial segmentation and quantification in tortuous arteries.” JMRI 2015, doi: 10.1002/jmri.24900.

Installation: This app is built using Matlab's appdesigner functionality. It was built using Matlab version 2019a; it is therefore recommended to use this version or newer for running this app. Download and unzip the files. All functionality of the app is built into PulseWaveVelocityTool.mlapp and the corresponding utilities/ subfolder.

Additionally, the use of this software requires the following Matlab toolboxes: - Signal Processing Toolbox - Image Processing Toolbox - Statistics and Machine Learning Toolbox

Data needed: The app works directly on reconstructed .par / .rec files from a Philips 4D flow acquisition. It assumes these are all located within a single folder. The files needed are as follows: SUBJECTID or other identifier1.par, SUBJECTID or other identifier1.rec SUBJECTID or other identifier2.par, SUBJECTID or other identifier2.rec SUBJECTID or other identifier3.par, SUBJECTID or other identifier3.rec

Getting Started: Within Matlab, navigate to the folder containing PulseWaveVelocityTool.mlapp. Type this into your command window: PulseWaveVelocityTool

Further details for each step within the app can be found in the corresponding user manual: 4DFlowPWVTool User Manual.pdf

Owner

  • Name: Eric Schrauben
  • Login: schrau24
  • Kind: user
  • Location: Amsterdam, Netherlands
  • Company: Amsterdam UMC

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: 4D Flow PWV Tool
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - name-particle: Eric
    family-names: Schrauben
    name-suffix: PhD
    email: schrau24@gmail.com
    orcid: 'https://orcid.org/0000-0002-7922-3615'
identifiers:
  - type: doi
    value: 10.1002/jmri.24900
repository-code: 'https://github.com/schrau24/4DFlowPWVTool'
abstract: ' Matlab-based app for 4D flow MRI measurement of pulse wave velocity'

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