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stitch-rs

Rust based image stitching with restricted tile offsets

https://github.com/andrewprivate/stitch-rs

Science Score: 57.0%

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    Found 1 DOI reference(s) in README
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    Low similarity (9.6%) to scientific vocabulary
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Repository

Rust based image stitching with restricted tile offsets

Basic Info
  • Host: GitHub
  • Owner: andrewprivate
  • Language: JavaScript
  • Default Branch: master
  • Homepage:
  • Size: 1.17 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created almost 2 years ago · Last pushed about 1 year ago
Metadata Files
Readme Citation

README.md

Image stitching with restricted tile offsets

sdfsfsfd drawio

Stitches images using a modified version of the algorithm described in Globally optimal stitching of tiled 3D microscopic image acquisitions.

The algorithm is modified to include a system to prioritize tile offset values within a distribution values to improve robustness for images containing periodic, or minimal features.

Installation

  1. Install Rust
  2. Open command line, change working directory to this repository. cd stitching
  3. Run cd rust
  4. Run cargo install --path .
  5. The stitching program is now installed and can be invoked with the stitch command

Basic Usage

Set up a stitch_config.json file in the directory containing your images. The basic format is as follows:

json { "mode": "3d", "overlap_ratio": [0.2, 0.2, 0.2], "tiles": [ { "path": "tile1.dcm", "x": 0, "y": 0, "z": 0, "width": 100, "height": 100, "depth": 100 }, { "path": "tile2.dcm", "x": 100, "y": 0, "z": 0, "width": 100, "height": 100, "depth": 100 }, { "path": "tile2.dcm", "x": 200, "y": 0, "z": 0, "width": 100, "height": 100, "depth": 100 } ] } You can then run stitch <path_to_stitch_config_file> to run stitching. The results will be output in the output folder.

Stitch Config Generator UI

Additionally, you can go to https://webstitch.app/ to easily generate configuration files for both this program and ImageJ.

Owner

  • Login: andrewprivate
  • Kind: user
  • Location: Somewhere in the USA

\o/

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: Stitch-rs
message: Rust based image stitching with restricted tile offsets
type: software
authors:
  - given-names: Andrew
    email: andrews3596@gmail.com
repository-code: 'https://github.com/andrewprivate/stitch-rs'
abstract: >-
  Stitches images using a modified version of the algorithm
  described in "Globally optimal stitching of tiled 3D
  microscopic image acquisitions."


  The algorithm is modified to include a system to
  prioritize tile offset values within a distribution values
  to improve robustness for images containing periodic, or
  minimal features.
keywords:
  - stitching
  - image processing

GitHub Events

Total
  • Push event: 18
Last Year
  • Push event: 18

Dependencies

rust/Cargo.lock cargo
  • 149 dependencies
rust/Cargo.toml cargo
pom.xml maven
  • edu.mines:mines-jtk
  • mpicbg:mpicbg
  • net.imagej:ij
  • net.imglib2:imglib2
  • net.imglib2:imglib2-algorithm
  • net.imglib2:imglib2-ij
  • ome:bio-formats_plugins
  • ome:formats-api
  • ome:formats-bsd
  • org.openmicroscopy:ome-common
  • org.openmicroscopy:ome-xml
  • sc.fiji:Fiji_Plugins
  • sc.fiji:fiji-lib
  • sc.fiji:legacy-imglib1
  • junit:junit test