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https://github.com/babinyurii/cancer_gene_expression_profile_analysis-microarray_data

analysis of the dataset from kaggle.com

https://github.com/babinyurii/cancer_gene_expression_profile_analysis-microarray_data

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
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    codemeta.json file
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    .zenodo.json file
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    DOI references
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    Academic publication links
    Links to: ncbi.nlm.nih.gov
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
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    Scientific vocabulary similarity
    Low similarity (3.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

analysis of the dataset from kaggle.com

Basic Info
  • Host: GitHub
  • Owner: babinyurii
  • Language: Jupyter Notebook
  • Default Branch: master
  • Homepage:
  • Size: 2.6 MB
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  • Stars: 1
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Created over 8 years ago · Last pushed over 8 years ago

https://github.com/babinyurii/cancer_gene_expression_profile_analysis-microarray_data/blob/master/ 

The data set is derived from kaggle.com: https://www.kaggle.com/crawford/gene-expression.
These data represent expression profiles of cancer patients. 
Gene expression is measured using microarrays. Two types of cancer are included: acute myeloid leukemia (AML)
and acute lymphoblastic leukemia (ALL).
The data are analyzed by principal component analysis (PCA) which is a common dimension reduction technique.
The file "1_ALL_AML_train_and_test_data_set_PCA_ .ipynb" contains PCA of training and test data sets.
The file "2_ALL_AML_whole_data_PCA_.ipynb" is intended to compare PCA of the whole data both with normalizing and without it.
"3_ALL_AML_correlation_analysis_coregulated_genes" is an attempt to create a rough pattern for coregulated genes search, 
which may be of great interest in some study

The original study is: Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression
Science 286:531-537. (1999). Published: 1999.10.14 T.R. Golub, D.K. Slonim, P. Tamayo, C. Huard, M. Gaasenbeek, 
J.P. Mesirov, H. Coller, M. Loh, J.R. Downing, M.A. Caligiuri, C.D. Bloomfield, and E.S. Lander
https://www.ncbi.nlm.nih.gov/pubmed/10521349

Owner

  • Name: Yuriy Babin
  • Login: babinyurii
  • Kind: user

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