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Open Source Science

https://github.com/bactopia/bactopia.github.io

Bactopia Documentation

https://github.com/bactopia/bactopia.github.io

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.8%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Bactopia Documentation

Basic Info
  • Host: GitHub
  • Owner: bactopia
  • License: mit
  • Language: Jinja
  • Default Branch: master
  • Homepage: https://bactopia.github.io
  • Size: 68.5 MB
Statistics
  • Stars: 3
  • Watchers: 3
  • Forks: 9
  • Open Issues: 0
  • Releases: 0
Created over 6 years ago · Last pushed over 1 year ago
Metadata Files
Readme License

README.md

bactopia.github.io

Bactopia Documentation

Local Install

```{bash}

Create a MkDocs environment

mamba create -n bactopia-docs -c conda-forge -c bioconda mkdocs pip setuptools conda activate bactopia-docs

Install mkdocs-material

pip install mkdocs-material

Or, insiders edition

pip install git+https://${GH_TOKEN}@github.com/squidfunk/mkdocs-material-insiders.git

Clone the repo

git clone git@github.com:bactopia/bactopia.github.io.git cd bactopia.github.io

Serve the docs

mkdocs serve -a 0.0.0.0:8000 ```

Owner

  • Name: Bactopia
  • Login: bactopia
  • Kind: organization
  • Location: United States of America

Nextflow DSL2 pipeline for the complete analysis of bacterial genomes

GitHub Events

Total
  • Watch event: 1
  • Push event: 2
  • Pull request event: 2
  • Fork event: 3
Last Year
  • Watch event: 1
  • Push event: 2
  • Pull request event: 2
  • Fork event: 3

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 0
  • Total pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • maxlcummins (1)
  • fmaguire (1)
  • rwilliams (1)
  • jodyphelan (1)
  • thecaffiend (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

requirements.txt pypi
  • mkdocs-material-extensions *
  • pygments *
  • pymdown-extensions *
.github/workflows/build-docs.yml actions
  • EndBug/add-and-commit v7 composite
  • actions/checkout v2 composite
  • conda-incubator/setup-miniconda v2 composite