scikit-surgerytutorial02

SciKit-Surgery Tutorial02 provides a tutorial on how to implement a simple algorithm using the SciKit-Surgery project's Python Template

https://github.com/scikit-surgery/scikit-surgerytutorial02

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SciKit-Surgery Tutorial02 provides a tutorial on how to implement a simple algorithm using the SciKit-Surgery project's Python Template

README.rst

SciKit-Surgery Tutorial on Software Development for Clinical Translation
========================================================================

.. image:: https://github.com/SciKit-Surgery/scikit-surgerytutorial02/raw/master/tut02_logo.gif
   :height: 128px
   :width: 128px
   :target: https://github.com/SciKit-Surgery/scikit-surgerytutorial02
   :alt: Logo

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.. image:: https://readthedocs.org/projects/scikit-surgerytutorial02/badge/?version=latest
    :target: http://scikit-surgerytutorial02.readthedocs.io/en/latest/?badge=latest
    :alt: Documentation Status

.. image:: https://img.shields.io/badge/Cite-SciKit--Surgery-informational
   :target: https://doi.org/10.1007/s11548-020-02180-5
   :alt: The SciKit-Surgery paper

.. image:: https://img.shields.io/badge/Contributor%20Covenant-2.1-4baaaa.svg
   :target: CODE_OF_CONDUCT.md

.. image:: https://img.shields.io/badge/MICCAI%20Educational%20Challenge-Thanks%20for%20Coming-yellow
   :target: https://miccai-sb.github.io/materials.html#mec2019
   :alt: Finalist in 2019 MICCAI Educational Challenge

.. image:: https://img.shields.io/twitter/follow/scikit_surgery?style=social
   :target: https://twitter.com/scikit_surgery?ref_src=twsrc%5Etfw
   :alt: Follow scikit_surgery on twitter

Author(s): Miguel Xochicale and Stephen Thompson
Contributor(s): Sujon Hakim, Mian Asbat Ahmad, Thomas Dowrick and Matt Clarkson

This is the SciKit-Surgery Tutorial on Software Development for Clinical Translation. It is targeted at researchers working in medical imaging and computer aided interventions, who want to maximise the impact of their work by publishing robust and reusable code.
The tutorial will guide the user through using the SciKit-Surgery Python template to create a well written and reusable algorithm library. 

The SciKit-Surgery Tutorial on Software Development for Clinical Translation is part of the `SciKit-Surgery`_ software project, developed at the `Wellcome EPSRC Centre for Interventional and Surgical Sciences`_, part of `University College London (UCL)`_.

This SciKit-Surgery Tutorial is tested on Python 3.8. and may support other Python versions.

Contributing
^^^^^^^^^^^^

Please see the `contributing guidelines`_.

Useful links
^^^^^^^^^^^^

* `Source code repository`_
* `Documentation`_


Licensing and copyright
-----------------------

Copyright 2019 University College London.
SciKit-SurgeryTutorial02 is released under the BSD-3 license. Please see the `license file`_ for details.


Acknowledgements
----------------

Supported by `Wellcome`_ and `EPSRC`_.


.. _`Wellcome EPSRC Centre for Interventional and Surgical Sciences`: http://www.ucl.ac.uk/weiss
.. _`source code repository`: https://github.com/SciKit-Surgery/scikit-surgerytutorial02
.. _`Documentation`: https://scikit-surgerytutorial02.readthedocs.io
.. _`SciKit-Surgery`: https://github.com/SciKit-Surgery/scikit-surgery
.. _`University College London (UCL)`: http://www.ucl.ac.uk/
.. _`Wellcome`: https://wellcome.ac.uk/
.. _`EPSRC`: https://www.epsrc.ac.uk/
.. _`contributing guidelines`: https://github.com/SciKit-Surgery/scikit-surgerytutorial02/blob/master/CONTRIBUTING.rst
.. _`license file`: https://github.com/SciKit-Surgery/scikit-surgerytutorial02/blob/master/LICENSE

Owner

Citation (CITATION.cff)

cff-version: 1.2.0
message: "If you use SciKit-Surgery Tutorial02 in your research, please cite it as below."
authors:
- family-names: "Thompson"
  given-names: "Stephen"
  orcid: "https://orcid.org/0000-0001-7286-1326"
title: "SciKit-SurgeryTutorial02"
url: "https://github.com/SciKit-Surgery/scikit-surgerytutorial02"
preferred-citation:
  type: article
  authors:
  - family-names: "Thompson"
    given-names: "Stephen"
    orcid: "https://orcid.org/0000-0001-7286-1326"
  - family-names: "Dowrick"
    given-names: "Thomas"
    orcid: "https://orcid.org/0000-0002-2712-4447"
  - family-names: "Ahmad"
    given-names: "Mian"
    orcid: "https://orcid.org/0000-0002-4706-4146"
  - family-names: "Xiao"
    given-names: "Guofang"
  - family-names: "Koo"
    given-names: "Bongjin"
    orcid: "https://orcid.org/0000-0002-3611-4988"
  - family-names: "Bonmati"
    given-names: "Ester"
    orcid: "https://orcid.org/0000-0001-9217-5438"
  - family-names: "Kahl"
    given-names: "Kim"
  - family-names: "Clarkson"
    given-names: "Matthew"
    orcid: "https://orcid.org/0000-0002-5565-1252"
  doi: 10.1007/s11548-020-02180-5
  journal: "International journal of computer assisted radiology and surgery"
  start: 1075
  end: 1084
  title: "SciKit-Surgery: Compact Libraries for Surgical Navigation"
  volume: 15
  issue: 7
  year: 2020

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