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https://github.com/bansallab/spatialaggregation

Accompanies the manuscript "Spatial aggregation choice in the era of digital and administrative surveillance data"

https://github.com/bansallab/spatialaggregation

Science Score: 13.0%

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Keywords

aggregation-choice disease-surveillance influenza spatial-aggregation spatial-data-analysis
Last synced: 5 months ago · JSON representation

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Accompanies the manuscript "Spatial aggregation choice in the era of digital and administrative surveillance data"

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  • Host: GitHub
  • Owner: bansallab
  • Language: R
  • Default Branch: main
  • Homepage:
  • Size: 3.15 MB
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aggregation-choice disease-surveillance influenza spatial-aggregation spatial-data-analysis
Created almost 4 years ago · Last pushed over 3 years ago

https://github.com/bansallab/spatialaggregation/blob/main/ 

# Spatial aggregation choice in the era of digital and administrative surveillance data

This repository provides the data and source code for the following paper: Lee, Elizabeth C., Ali Arab, Vittoria Colizza, and Shweta Bansal. "Spatial aggregation choice in the era of digital and administrative surveillance data." PLOS Digital Health. https://doi.org/10.1371/journal.pdig.0000039

Note: This repository uses git lfs due to a handful of large files. You may need to install this extension on your computer to pull these large files when cloning the repository. See more details [here](https://git-lfs.github.com/).

## Data (`R_export/`)
Processed weekly time series of influenza-like illness (ILI) intensity from 2001 through 2009. A codebook for the key column names can be found in this folder.
* county scale: `R_export/fullIndicAll_periodicReg_irDt_Octfit_span0.4_degree2_analyzeDB_cty.csv`
* state scale: `R_export/fullIndicAll_periodicReg_irDt_Octfit_span0.4_degree2_analyzeDB_st.csv`
* HHS region scale: `R_export/fullIndicAll_periodicReg_irDt_Octfit_span0.4_degree2_analyzeDB_reg.csv`

Other data in this folder may be required data input files to run the code or analysis outputs generated by the code.

## Code (`programs/`)
Scripts in this folder were used to perform analyses described in this paper or produce figures in the main text or supplementary material (See `SM_figures/` folder).

## Other Input Files (`reference_data/`)
Files in this folder may be required input files to run the code. They are county, state, and HHS region coordinates, abbreviations, and shapefiles derived from public sources of information.

Owner

  • Name: Bansal Lab
  • Login: bansallab
  • Kind: organization
  • Location: Georgetown University, Washington DC

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