https://github.com/barabasi-lab/quantifying_biobanks
Code to curate and analyze a database of biobanks and cohort studies
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: ncbi.nlm.nih.gov, zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.7%) to scientific vocabulary
Repository
Code to curate and analyze a database of biobanks and cohort studies
Basic Info
- Host: GitHub
- Owner: Barabasi-Lab
- Language: Python
- Default Branch: main
- Size: 311 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Quantifying the Impact of Biobanks and Cohort Studies
Accompanying code to produce and analyze the data from the paper Quantifying the Impact of Biobanks and Cohort Studies.
The associated data can be found in the corresponding Zenodo Repository.
The documentation to run the code is found in the PDF file documentation.pdf.
Datasrouces
Several repositories were used to extract the names of biobanks and associated cohort studies, their mentions across biomedical documents, and their validation.
Biobanks and Cohorts
- BioLINCC
- BBMRI-ERIC
- Birthcohorts
- CEDC (Cancer Epidemiology Descriptive Cohort Database)
- Cohort profiles and updates
- DCEG (Division of Cancer Epidemiology & Genetics)
- dbGaP
- DPUK (Dementias Platform UK)
- EPND (European platform for neurodegenerative diseases)
- IADRP
- JPND (EU Join Program Neurodegenerative disease research)
- Maelstrom
- Molgenis (European Networks Health Data and Cohort Catalogue))
- P3 (Public Population Project in Genomics and Society)
- SciCrunch
- The Pooling Project of Prospective Studies of Diet and Cancer
- UKRI (UK research and innovation cohort directory)
- Wikipedia biobanks
- Wikipedia cohorts
Mentions
The following databases were stored in Google BigQuery:
Validation
Analysis
Owner
- Name: Barabasi Lab
- Login: Barabasi-Lab
- Kind: organization
- Location: Boston, MA
- Website: https://www.barabasilab.com/
- Repositories: 10
- Profile: https://github.com/Barabasi-Lab
GitHub Events
Total
- Push event: 1
Last Year
- Push event: 1