https://github.com/barbarahelena/helius-metabolomics-fmet
Formylmethionine project
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.3%) to scientific vocabulary
Last synced: 9 months ago
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JSON representation
Repository
Formylmethionine project
Basic Info
- Host: GitHub
- Owner: barbarahelena
- Language: R
- Default Branch: main
- Size: 33.2 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Created over 3 years ago
· Last pushed about 1 year ago
Metadata Files
Readme
README.md
HELIUS metabolomics - fMet project
Introduction
This repository describes the analyses for the HELIUS metabolomics / fMet project.
Overview scripts
- Data cleaning HELIUS data
- Descriptives (table 1)
- Machine learning (XGBoost) models: creating model input tables, running models
- Processing ML results: top predictors and explained variance
- Linear regression models: all subjects and stratified for ethnicity
- Correlations between fMet and nitric oxide pathway metabolites
- Dietary intake analysis
- ETANASH: effect gut microbiota on fMet levels (before and after antibiotics)
- Validation cohorts: forest plots of results from validation cohorts
Assets folder
In this folder, you can find a functions file (predominantly used for the processing of ML results), a conda yaml for the XGBoost ML environment, and an instruction for setting up the XGBoost env.
Reference to paper
This paper is unpublished. A reference will follow when the paper can be found online.
Owner
- Name: Barbara Verhaar
- Login: barbarahelena
- Kind: user
- Location: Amsterdam
- Twitter: BarbaraVerhaar
- Repositories: 1
- Profile: https://github.com/barbarahelena
PhD candidate @ Amsterdam UMC Vascular medicine
GitHub Events
Total
- Push event: 1
- Public event: 1
Last Year
- Push event: 1
- Public event: 1