https://github.com/base4analytics/test-datasets
Test data to be used for automated testing with the nf-core pipelines
Science Score: 18.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.3%) to scientific vocabulary
Repository
Test data to be used for automated testing with the nf-core pipelines
Basic Info
- Host: GitHub
- Owner: base4analytics
- License: mit
- Default Branch: master
- Homepage: https://nf-co.re
- Size: 9.69 GB
Statistics
- Stars: 0
- Watchers: 0
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Test data to be used for automated testing with the nf-core pipelines
⚠️ Do not merge your test data to
master! Each pipeline has a dedicated branch (and a special one for modules)
Introduction
nf-core is a collection of high quality Nextflow pipelines. This repository contains various files for CI and unit testing of nf-core pipelines and infrastructure.
The principle for nf-core test data is as small as possible, as large as necessary. Please see the guidelines for more detailed information. Always ask for guidance on the nf-core slack before adding new test data.
Documentation
nf-core/test-datasets comes with documentation in the docs/ directory:
Downloading test data
Due the large number of large files in this repository for each pipeline, we highly recommend cloning only the branches you would use.
bash
git clone <url> --single-branch --branch <pipeline/modules/branch_name>
To subsequently clone other branches[^1]
bash
git remote set-branches --add origin [remote-branch]
git fetch
Support
For further information or help, don't hesitate to get in touch on our Slack organisation (a tool for instant messaging).
[^1]: From stackoverflow
Owner
- Name: base4analytics
- Login: base4analytics
- Kind: organization
- Location: Israel
- Repositories: 1
- Profile: https://github.com/base4analytics
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use `nf-core tools` in your work, please cite the `nf-core` publication"
authors:
- family-names: Ewels
given-names: Philip
- family-names: Peltzer
given-names: Alexander
- family-names: Fillinger
given-names: Sven
- family-names: Patel
given-names: Harshil
- family-names: Alneberg
given-names: Johannes
- family-names: Wilm
given-names: Andreas
- family-names: Ulysse Garcia
given-names: Maxime
- family-names: Di Tommaso
given-names: Paolo
- family-names: Nahnsen
given-names: Sven
title: "The nf-core framework for community-curated bioinformatics pipelines."
version: 2.4.1
doi: 10.1038/s41587-020-0439-x
date-released: 2022-05-16
url: https://github.com/nf-core/tools
prefered-citation:
type: article
authors:
- family-names: Ewels
given-names: Philip
- family-names: Peltzer
given-names: Alexander
- family-names: Fillinger
given-names: Sven
- family-names: Patel
given-names: Harshil
- family-names: Alneberg
given-names: Johannes
- family-names: Wilm
given-names: Andreas
- family-names: Ulysse Garcia
given-names: Maxime
- family-names: Di Tommaso
given-names: Paolo
- family-names: Nahnsen
given-names: Sven
doi: 10.1038/s41587-020-0439-x
journal: nature biotechnology
start: 276
end: 278
title: "The nf-core framework for community-curated bioinformatics pipelines."
issue: 3
volume: 38
year: 2020
url: https://dx.doi.org/10.1038/s41587-020-0439-x