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wonkyconn

Evaluating the residual motion in fMRI connectome and visualise reports

https://github.com/simexp/wonkyconn

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.3%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Evaluating the residual motion in fMRI connectome and visualise reports

Basic Info
  • Host: GitHub
  • Owner: SIMEXP
  • License: mit
  • Language: Python
  • Default Branch: main
  • Size: 87.8 MB
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 5
  • Open Issues: 18
  • Releases: 0
Created about 2 years ago · Last pushed 11 months ago
Metadata Files
Readme License Code of conduct Citation

README.md

pre-commit.ci status License: MIT https://github.com/psf/black Documentation Status

wonkyconn

Evaluating the residual motion in fMRI connectome and visualise reports.

We are currently working towards 0.1.0 release!!!! This is not a stable project yet.

CLI

  • Allow specifying the variables for QC-FC

Needs to have gender and age

bash --phenotypes file.tsv

  • Calculate distance dependence based on given BEP17 naming for atlas

bash --atlas Schaefer20187Networks200Parcels file.nii.gz

Tasks

Owner

  • Name: SIMEXP
  • Login: SIMEXP
  • Kind: organization
  • Email: pierre.bellec@criugm.qc.ca
  • Location: Montreal, Canada

Laboratory for brain simulation and exploration

GitHub Events

Total
  • Issues event: 19
  • Delete event: 2
  • Member event: 1
  • Issue comment event: 22
  • Push event: 17
  • Pull request review comment event: 2
  • Pull request review event: 8
  • Pull request event: 14
  • Fork event: 3
  • Create event: 2
Last Year
  • Issues event: 19
  • Delete event: 2
  • Member event: 1
  • Issue comment event: 22
  • Push event: 17
  • Pull request review comment event: 2
  • Pull request review event: 8
  • Pull request event: 14
  • Fork event: 3
  • Create event: 2

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 14
  • Total pull requests: 17
  • Average time to close issues: 3 days
  • Average time to close pull requests: 17 days
  • Total issue authors: 3
  • Total pull request authors: 6
  • Average comments per issue: 0.21
  • Average comments per pull request: 0.24
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 8
Past Year
  • Issues: 11
  • Pull requests: 10
  • Average time to close issues: 3 days
  • Average time to close pull requests: about 1 hour
  • Issue authors: 3
  • Pull request authors: 5
  • Average comments per issue: 0.27
  • Average comments per pull request: 0.3
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 3
View more stats
Top Authors
Issue Authors
  • htwangtw (9)
  • wangseann (3)
  • pbergeret12 (2)
Pull Request Authors
  • wangseann (5)
  • dependabot[bot] (5)
  • htwangtw (3)
  • github-actions[bot] (2)
  • pbergeret12 (1)
  • pre-commit-ci[bot] (1)
Top Labels
Issue Labels
help wanted (1) bug (1)
Pull Request Labels
dependencies (5) github_actions (2)

Dependencies

.github/workflows/docker.yml actions
  • actions/cache v4 composite
  • actions/cache/restore v4 composite
  • actions/checkout v4 composite
  • actions/download-artifact v4 composite
  • actions/setup-python v5 composite
  • actions/upload-artifact v4 composite
  • docker/login-action e92390c5fb421da1463c202d546fed0ec5c39f20 composite
.github/workflows/test.yml actions
  • actions/cache v4 composite
  • actions/cache/restore v4 composite
  • actions/checkout v4 composite
  • actions/download-artifact v4 composite
  • actions/setup-python v5 composite
  • actions/upload-artifact v4 composite
  • codecov/codecov-action v4 composite
.github/workflows/validate_cff.yml actions
  • actions/checkout v4 composite
  • citation-file-format/cffconvert-github-action 2.0.0 composite
Dockerfile docker
  • python@sha256 de58dcff6a8ccd752899e667aded074ad3e8f5fd552969ec11276adcb18930a4 build
docs/requirements.txt pypi
pyproject.toml pypi
  • jinja2 >= 2.0
  • nilearn [plotting] >=0.10.3
  • pybids >=0.15.0, <0.16.0
  • rich *
  • setuptools *
  • templateflow < 23.0.0
requirements.txt pypi
  • Jinja2 ==3.1.3
  • MarkupSafe ==2.1.5
  • Pygments ==2.17.2
  • SQLAlchemy ==1.3.24
  • astor ==0.8.1
  • bids-validator ==1.14.4
  • certifi ==2024.2.2
  • charset-normalizer ==3.3.2
  • click ==8.1.7
  • contourpy ==1.2.0
  • cycler ==0.12.1
  • docopt ==0.6.2
  • fonttools ==4.50.0
  • formulaic ==0.5.2
  • idna ==3.6
  • interface-meta ==1.3.0
  • joblib ==1.3.2
  • kaleido ==0.2.1
  • kiwisolver ==1.4.5
  • lxml ==5.1.1
  • markdown-it-py ==3.0.0
  • matplotlib ==3.8.3
  • mdurl ==0.1.2
  • nibabel ==5.2.1
  • nilearn ==0.10.3
  • num2words ==0.5.13
  • numpy ==1.26.4
  • packaging ==24.0
  • pandas ==2.2.1
  • pillow ==10.2.0
  • plotly ==5.20.0
  • pybids ==0.15.6
  • pyparsing ==3.1.2
  • python-dateutil ==2.9.0.post0
  • pytz ==2024.1
  • requests ==2.31.0
  • rich ==13.7.1
  • scikit-learn ==1.4.1.post1
  • scipy ==1.12.0
  • six ==1.16.0
  • templateflow ==0.8.1
  • tenacity ==8.2.3
  • threadpoolctl ==3.4.0
  • tqdm ==4.66.2
  • typing_extensions ==4.10.0
  • tzdata ==2024.1
  • urllib3 ==2.2.1
  • wrapt ==1.16.0