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https://github.com/batoolmm/exonr

R package for generating beautiful and customizable plots for the exons and introns of any gene

https://github.com/batoolmm/exonr

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
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    DOI references
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    Academic publication links
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    1 of 1 committers (100.0%) from academic institutions
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    Scientific vocabulary similarity
    Low similarity (6.3%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

R package for generating beautiful and customizable plots for the exons and introns of any gene

Basic Info
  • Host: GitHub
  • Owner: BatoolMM
  • License: other
  • Language: R
  • Default Branch: main
  • Homepage:
  • Size: 486 KB
Statistics
  • Stars: 12
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 5 years ago · Last pushed about 5 years ago
Metadata Files
Readme License

README.md

exonR

fair-software.eu

exonR is an R package for generating beautiful and customizable plots for the exons and introns of any gene.

If you find any bugs, have any feature requests or feedback, please submit an issue.

To download and install the development version of the package, use devtools: install.packages("devtools") devtools::install_github("BatoolMM/exonR") Once you've installed the package, you can load the library in the standard way:

library(exonR) Basic usage: ``` BRCA2 <- findexons("NM000059") BRCA2 chromosome/scaffoldname exonregionstartbp exonregionend_bp 1 13 32890559 32890664 2 13 32893214 32893462 3 13 32899213 32899321 5'utrstart 5'utrend 3'utrstart 3'utrend exon_length 1 32890559 32890597 NA NA 105 2 NA NA NA NA 248 3 NA NA NA NA 108

graph <- plotexons(BRCA2, BRCA2$exonregionstartbp, BRCA2$exonregionend_bp) ```

TODO:

  • FAIRfication of the package

Owner

  • Name: Batool Almarzouq
  • Login: BatoolMM
  • Kind: user
  • Company: University of Liverpool, Alan Turing Institute

Ph.D. in Biochemistry. Experience in cancer bioinformatics, RNA-Seq, network biology, pathway enrichment, and integrated –omics analyses, Docker, HPC (She/her).

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Last synced: over 1 year ago

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  • Total Commits: 36
  • Total Committers: 1
  • Avg Commits per committer: 36.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
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Name Email Commits
Batool Almarzouq b****l@l****k 36
Committer Domains (Top 20 + Academic)
liverpool.ac.uk: 1

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  • Bot pull requests: 0
Past Year
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  • Pull requests: 0
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