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https://github.com/bayer-group/cmc-knowledge-graph-setup

Main repository containing all submodules. CMC (Chemistry, Manufacturing and Control) Knowledge Graph is an exemplary setup of data and ontologies for knowledge graph infrastructure including dockerized frontend and backend solution. This pieces of code are the pruned and anonymized part of our internal CMC KG integration platform.

https://github.com/bayer-group/cmc-knowledge-graph-setup

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.5%) to scientific vocabulary

Keywords

docker java javascript owl python rdfs sparql turtle
Last synced: 5 months ago · JSON representation

Repository

Main repository containing all submodules. CMC (Chemistry, Manufacturing and Control) Knowledge Graph is an exemplary setup of data and ontologies for knowledge graph infrastructure including dockerized frontend and backend solution. This pieces of code are the pruned and anonymized part of our internal CMC KG integration platform.

Basic Info
  • Host: GitHub
  • Owner: Bayer-Group
  • License: bsd-3-clause
  • Default Branch: main
  • Homepage:
  • Size: 8.79 KB
Statistics
  • Stars: 5
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Topics
docker java javascript owl python rdfs sparql turtle
Created over 1 year ago · Last pushed 11 months ago
Metadata Files
Readme License

README.md

Easy setup of the whole environment

The Setup is part of the CMC Knowledge Graph Application. This repository helps settings up a local environment based on Docker Compose.

Installation instructions

  1. Install Docker Desktop for Windows from Docker Hub (latest test with Docker Desktop v2.2.0.3)
  2. Clone this repository locally console git clone --recursive [URL to this Git repo]
  3. Pull all changes in all submodules console git pull --recurse-submodules
  4. Create a file .env in parallel to the file docker-compose.yml and insert the following variables (example values are shown): GRAPHDATABASE_USERNAME=admin GRAPHDATABASE_PASSWORD=admin
  5. Run docker-compose up to download and build all Docker images and startup the environment
  6. Wait for docker-compose to start up
  7. Open the KGE Frontend (see URL below). ****

Known problems

  • While building the frontend the following error could occur. In the Dockerfiles of the frontend applications node is used with an increased heap size while building the applications node --max_old_space_size=8000. Try to increase this, if the error occurs. FATAL ERROR: Ineffective mark-compacts near heap limit Allocation failed - JavaScript heap out of memory

  • After starting the application a second time, the fuseki database could throw exceptions. Delete the Docker container of the fuseki database with docker container rm fuseki. ATTENTION: This will remove all your created data and reload the database with the initial data.

  • fuseki-loader/loader.sh could contain Carriage Return characters, remove them.

Application URLs

| Component | URL for Docker environment | URL for local environment | Username | Password | | -------------------------------------------------------- | ------------------------------- | ------------------------------- |--------- | -------- | | Apache Jena Fuseki Database Webinterface | http://localhost:3030/ | - | admin | admin | | KGE-Editor-Frontend | http://localhost:4400/ | http://localhost:4400/| - | - | | KGE-Web-Service | http://localhost:8080/swagger | http://localhost:8080/swagger| - | - |

Quick Tips

Some quick tips and advices to work faster.

Docker

To purge all unused or dangling images, containers, volumes, and networks run the following command: console docker system prune -a

To remove all containers: console docker container rm $(docker container ls -aq)

Links

Owner

  • Name: Bayer Open Source
  • Login: Bayer-Group
  • Kind: organization

Science for a better life

GitHub Events

Total
  • Watch event: 4
  • Member event: 1
  • Push event: 5
  • Fork event: 1
Last Year
  • Watch event: 4
  • Member event: 1
  • Push event: 5
  • Fork event: 1

Committers

Last synced: 10 months ago

All Time
  • Total Commits: 11
  • Total Committers: 3
  • Avg Commits per committer: 3.667
  • Development Distribution Score (DDS): 0.545
Past Year
  • Commits: 11
  • Committers: 3
  • Avg Commits per committer: 3.667
  • Development Distribution Score (DDS): 0.545
Top Committers
Name Email Commits
ostreibel-bay 1****y 5
kanwalmeet.singhkochar.ext@bayer.com k****t@b****m 4
kanwal k****r@c****m 2
Committer Domains (Top 20 + Academic)
capgemini.com: 1 bayer.com: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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