https://github.com/bbfrederick/stabilitycalc
Automatic QC processing for fMRI data
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (6.0%) to scientific vocabulary
Repository
Automatic QC processing for fMRI data
Basic Info
Statistics
- Stars: 6
- Watchers: 4
- Forks: 3
- Open Issues: 1
- Releases: 0
Metadata Files
README.md
STABILITYCALC
by Blaise Frederick and Daniel M. Drucker
Stabilitycalc is part of a suite of python tools we use to monitor the stability of our fMRI system. We use a version of the fBIRN procedure to run daily phantom quality assurance tests on our research MR system. These phantom scans are then converted to NIFTI format and analyzed with stabilitycalc to look for system instabilities that could degrade our fMRI data.
The stabilitycalc package generates reports for individual scans, and tabulates performance over time, generating summary reports that put current performance into the context of normal operation. We use this to quickly identify scanner problems, and the individual reports give a good indication of what sort of problem we are having, which in turn helps us troubleshoot much more effectively.
Requirements
Stabilitycalc checks for some of its requirements before running. In general,
it requires a standard numpy/scipy/matplotlib environment, as well as
nibabel, nipype, dicom, pandas, and seaborn.
Owner
- Name: Blaise deB Frederick
- Login: bbfrederick
- Kind: user
- Website: www.nirs-fmri.net
- Twitter: blaisefrederick
- Repositories: 4
- Profile: https://github.com/bbfrederick
MR Physicist who took a very wrong turn somewhere in the 80's, and ended up in psychiatry. Director of the Optomagnetic Group in the McLean Hospital BIC.
GitHub Events
Total
- Issues event: 2
- Delete event: 5
- Issue comment event: 1
- Push event: 3
- Pull request event: 12
- Create event: 6
Last Year
- Issues event: 2
- Delete event: 5
- Issue comment event: 1
- Push event: 3
- Pull request event: 12
- Create event: 6
Dependencies
- actions/checkout v5 composite
- github/codeql-action/analyze v3 composite
- github/codeql-action/autobuild v3 composite
- github/codeql-action/init v3 composite
- actions/checkout v5 composite
- codespell-project/actions-codespell v2 composite
- codespell-project/codespell-problem-matcher v1 composite
- actions/checkout v5 composite
- codacy/git-version 2.8.5 composite
- docker/build-push-action v6 composite
- docker/login-action v3 composite
- docker/setup-buildx-action v3 composite
- docker/setup-qemu-action v3 composite
- gittools/actions/gitversion/execute v4.1.0 composite
- gittools/actions/gitversion/setup v4.1.0 composite
- docker/build-push-action v6 composite
- docker/login-action v3 composite
- docker/metadata-action v5 composite
- docker/setup-buildx-action v3 composite
- docker/setup-qemu-action v3 composite
- actions/checkout v5 composite
- actions/setup-python v5 composite
- actions/checkout v5 composite
- codacy/git-version 2.8.5 composite
- gittools/actions/gitversion/execute v4.1.0 composite
- gittools/actions/gitversion/setup v4.1.0 composite
- mako *
- matplotlib *
- nibabel *
- nipype *
- pandas *
- pydicom *
- seaborn *