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Recent Releases of https://github.com/bbfrederick/capcalc

https://github.com/bbfrederick/capcalc - Version 1.5.1.2 - 8/22/25 the "I have no idea what I'm doing" release.

  • (docs) Sigh. While fixing deployment I broke the documentation. This should fix it. Or not. Who knows? Not me, it seems.

- Python
Published by bbfrederick 11 months ago

https://github.com/bbfrederick/capcalc - Version 1.5.1.1 - 8/22/25 deployment bump, take 2.

  • (deployment) Well, that didn't work. Here's another attempt to fix pypi deployment.

- Python
Published by bbfrederick 11 months ago

https://github.com/bbfrederick/capcalc - Version 1.5.1 - 8/22/25 bump to fix deployment

  • (deployment) Attempt to fix pypi deployment.
  • (docs) A few tweaks to the sidebar.

- Python
Published by bbfrederick 11 months ago

https://github.com/bbfrederick/capcalc - Version 1.5.0 - 8/22/25 package modernization, general buff.

  • (package) Modernized packaging and installation to match rapidtide (moved pretty much everything to pyproject.toml).
  • (package) Fixed all the copyright notices.
  • (package) Added codespell.
  • (docs) Fixed readthedocs build (it's been broken for quite some time).
  • (Docker) Turned on provenance and sbom in Docker builds.
  • (Docker) Rebuilt on the newest basecontainer with several security fixes.
  • Merged many, many dependabot PR's

- Python
Published by bbfrederick 11 months ago

https://github.com/bbfrederick/capcalc - Version 1.4.0 - 11/18/23 Container update

  • (Docker) Made compatible with the new (small) basecontainer architecture.

- Python
Published by bbfrederick over 1 year ago

https://github.com/bbfrederick/capcalc - Version 1.3.9 - 4/25/23 omnibus checkpoint release

  • (package) Removed numba as a dependency.
  • (package) Made pyfftw an optional dependency (it's no longer in basecontainer).
  • (package) Made some proactive fixes for numpy 2.0.0 compatibility.
  • (package) Accepted several dependabot PRs.
  • (package) General cleanup of automated workflows to match updates to rapidtide.
  • (Docker) Cleaned up and simplified Dockerfile.
  • (Docker) Updated to basecontainer:latest-release (0.3.5 atm).

- Python
Published by bbfrederick about 2 years ago

https://github.com/bbfrederick/capcalc - Version 1.3.7 - 9/13/23 checkpoint release

  • Mass merge of a bunch of dependabot PRs.
  • (Docker) Updated to basecontainer 0.2.3.

- Python
Published by bbfrederick almost 3 years ago

https://github.com/bbfrederick/capcalc - Version 1.3.6 - 5/11/23 updated to python 3.11

  • (Docker) Updated to python 3.11 basecontainer.
  • (Docker) Fixed testdocker.sh.
  • (package) Modernized install procedure.

- Python
Published by bbfrederick about 3 years ago

https://github.com/bbfrederick/capcalc - Version 1.3.5 - 1/11/23 checkpoint

  • (capfromtcs) Fixed summary statistics outputs.

- Python
Published by bbfrederick over 3 years ago

https://github.com/bbfrederick/capcalc - Version 1.3.4 - 1/10/23 emergency bug fix

  • (capfromtcs) Revert change to max_iter when specifying initialcenters.

- Python
Published by bbfrederick over 3 years ago

https://github.com/bbfrederick/capcalc - Version 1.3.3 - 1/10/23 checkpoint release

  • (capfromtcs) Changed intialization of kmeans from initialcenters, save more intermediate results.
  • (utils.py) Factored out some transition array calculations.

- Python
Published by bbfrederick over 3 years ago

https://github.com/bbfrederick/capcalc - Version 1.3.2 - 11/15/22 emergency patch

  • (capfromtcs) Fixed a typo in specifying the initial k-means++ method.
  • (io) Updated libraries to match some changes in rapidtide.

- Python
Published by bbfrederick over 3 years ago

https://github.com/bbfrederick/capcalc - Version 1.3.1 - 11/10/22 Alternative method of reusing old models

  • (capfromtcs) Added new option "--initialcenters" to allow specification of k-means cluster centers. This lets you reuse the CAPS as previous runs, but gets around the difficulty of reading back old models run under a different version of python or scikit-learn.

- Python
Published by bbfrederick over 3 years ago

https://github.com/bbfrederick/capcalc - Version 1.3.0 - 11/10/22 Major code cleanup and bug fix

  • (package) Removed rapidtide as a dependency by copying over the necessary support routines.
  • (Docker) Updated basecontainer to latest, switched over to using pip rather than mamba for env.
  • (docs) Corrected a problem that was causing readthedocs build to fail.

- Python
Published by bbfrederick over 3 years ago

https://github.com/bbfrederick/capcalc - Version 1.2.3 - 8/31/22 checkpoint

  • (capfromtcs, clustercomp) Used newer, non-deprecated method to access nifti files with nibabel.
  • (package) Added docker and singularity test scripts.
  • (package) Reformatted several files with black.
  • (package) Made many (unsuccesful) attempts to get the documentation to build.

- Python
Published by bbfrederick almost 4 years ago

https://github.com/bbfrederick/capcalc - Version 1.2.2.5 - 8/30/22 deployment bug fix

  • (package) Bump to trigger github deployment.

- Python
Published by bbfrederick almost 4 years ago

https://github.com/bbfrederick/capcalc - Version 1.2.2.1 - 8/29/22 deployment bug fix

  • (package) Fixed versioneer installation.

- Python
Published by bbfrederick almost 4 years ago

https://github.com/bbfrederick/capcalc - Version 1.2.2 - 8/29/22 checkpoint

(package) Updated pyproject.toml and versioneer to try to fix pypi deployment.

- Python
Published by bbfrederick almost 4 years ago

https://github.com/bbfrederick/capcalc - Version 1.2.1 - 8/22/22 deployment fix

  • (Docker) Fixed Dockerfile error.
  • (package) Updated pypi authentication information.

- Python
Published by bbfrederick almost 4 years ago

https://github.com/bbfrederick/capcalc - Version 1.2.0 (8/22/22) - Cumulative update including compatibility with rapidtide 2.x

  • (Docker) Added Docker compatibility
  • (package) Updated to match the current version of rapidtide.
  • (package) Added "refresh" script to simplify updates.
  • (package) Formatting changes.
  • (capfromtcs) Fixed import of joblib, updated to new NonCausalFilter calling conventions.
  • (clusternifti) Major overhaul. Added normalization, PCA and ICA dimensionality reduction, switched to argparse, added repeats.
  • (clustersort) New program to harmonize multiple cluster solutions.
  • (clusternifti, clustersort, supercluster) Harmonized mask specification arguments and internal variable names.

- Python
Published by bbfrederick almost 4 years ago