https://github.com/bblodfon/colomoto-docker
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
○codemeta.json file
-
○.zenodo.json file
-
✓DOI references
Found 4 DOI reference(s) in README -
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (11.3%) to scientific vocabulary
Last synced: 10 months ago
·
JSON representation
Repository
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Basic Info
- Host: GitHub
- Owner: bblodfon
- Default Branch: for-next
- Homepage: http://colomoto.org/notebook
- Size: 9.22 MB
Statistics
- Stars: 0
- Watchers: 0
- Forks: 0
- Open Issues: 0
- Releases: 0
Fork of colomoto/colomoto-docker
Created about 2 years ago
· Last pushed about 2 years ago
https://github.com/bblodfon/colomoto-docker/blob/for-next/
# The CoLoMoTo Docker and Notebook
[](https://badge.fury.io/py/colomoto-docker)
[](https://mybinder.org/v2/gh/colomoto/colomoto-docker/mybinder/latest)
[](https://matrix.to/#/#colomoto_community:gitter.im)
[](https://doi.org/10.3389/fphys.2018.00680)
The CoLoMoTo Interactive Notebook relies on *Docker* and *Jupyter* technologies to provide a **unified environment** to edit, execute, share, and reproduce analyses of **qualitative models of biological networks**.
## Quick usage guide
You need [Docker](https://docs.docker.com/get-docker/) and [Python](http://python.org).
We support GNU/Linux, macOS, and Windows.
Install the helper script in a terminal:
pip install -U colomoto-docker # or python3 -m pip install ..
The CoLoMoTo notebook can be started by executing in a terminal (if using Docker Toolbox, in a Docker Terminal):
colomoto-docker
The container can be stopped by pressing Ctrl+C keys.
A specific tag can be specified using the `-V` option. For example:
colomoto-docker -V latest # fetches the latest published image
colomoto-docker -V 2024-04-01 # fetches a specific image
**Warning**: by default, the files within the Docker container are isolated from the running host computer, therefore *files are deleted after stopping the container*, except the files within the `persistent` directory.
To have access to the files of your current directory you can use the `--bind` option:
colomoto-docker --bind .
See [usage guide](docs/usage.md) for further options and alternative methods.
## Contribute
See how to [add your tool](CONTRIBUTING.md).
Owner
- Name: John Zobolas
- Login: bblodfon
- Kind: user
- Repositories: 13
- Profile: https://github.com/bblodfon