https://github.com/bbuchfink/deepclust-data
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.0%) to scientific vocabulary
Last synced: 10 months ago
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JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: bbuchfink
- License: gpl-3.0
- Language: Shell
- Default Branch: main
- Size: 24.9 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 1
- Open Issues: 0
- Releases: 0
Created over 2 years ago
· Last pushed 10 months ago
Metadata Files
Readme
License
README.md
Scripts to reproduce the results of Buchfink et al., "Sensitive clustering of protein sequences at tree-of-life scale using DIAMOND DeepClust".
Data files
Data files that are required (see Data availability):
arch80_all.tsv: File mapping NCBI accessions to Pfam domain architectures.nr_accessions.tsv.zst: List of all accessions in NR database that was used for the main benchmark.clan2acc.tsv: File mapping Pfam accessions to clans.clust.dedup2.tsv.zst: TSV file mapping cluster member sequences to representatives for the big ~19bn clustering run.centroids.dedup.faa: FASTA file of representatives for the big ~19bn clustering run.
Owner
- Name: Benjamin Buchfink
- Login: bbuchfink
- Kind: user
- Location: Tübingen, Germany
- Company: Max Planck Institute for Biology Tübingen
- Website: https://twitter.com/bbuchfink
- Twitter: bbuchfink
- Repositories: 1
- Profile: https://github.com/bbuchfink
GitHub Events
Total
- Delete event: 1
- Push event: 11
- Public event: 1
- Fork event: 1
- Create event: 1
Last Year
- Delete event: 1
- Push event: 11
- Public event: 1
- Fork event: 1
- Create event: 1
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Benjamin Buchfink | b****k@g****m | 77 |
| emile151 | 8****1 | 3 |
| Ubuntu | u****u@i****l | 3 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 0
- Total pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: about 2 hours
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- emile151 (1)