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Recent Releases of https://github.com/bcb-unl/run_dbcan

https://github.com/bcb-unl/run_dbcan - v5.1.2

  1. Fix potential overview issue.
  2. Fix the dbcan-sub substrate order issue.
  3. Fix substrate prediction issue (Now, when you re-run the command, it will automatically overwrite the previous diamond blast result instead of directly using the previous result); Now the program will not crash when there is no substrate result.
  4. Improve substrate plot: now we add sulfatase and peptidase, and fix some old issues.
  5. We have updated our dbCAN-PUL database and fam-substrate mapping table, and related codes have been improved.
  6. Update GitHub CI to fix the issue.

- Python
Published by Xinpeng021001 about 1 year ago

https://github.com/bcb-unl/run_dbcan - v5.1.1

  1. Fixed the inconsistent order in cgcstandardout.tsv and cgc.gff when there are multiple domains. Currently, when we select functional annotation, we follow the priority of CAZyme>TC>TF>STP>SULFATLAS>PEPTIDASE.
  2. Fixed the incorrect log display in CGCFinder.

- Python
Published by Xinpeng021001 about 1 year ago

https://github.com/bcb-unl/run_dbcan - v5.1.0

  1. Add additional databases for peptidase and sulfatase annotation.
  2. Improve overview generation.
  3. Revise cgccircileplot function; now we support DEGs on the plot (beta-function).
  4. Fix multiple errors and potential bugs to support nf-core and nextflow.

- Python
Published by Xinpeng021001 about 1 year ago

https://github.com/bcb-unl/run_dbcan - v5.0.6

Fix plots.py and utils.py input file name issue

- Python
Published by Xinpeng021001 about 1 year ago

https://github.com/bcb-unl/run_dbcan - v5.0.5

  1. Improve overview.tsv file based on issue https://github.com/bcb-unl/run_dbcan/issues/9
  2. Add a version function to show current version information.

- Python
Published by Xinpeng021001 about 1 year ago

https://github.com/bcb-unl/run_dbcan - v5.0.4

Change the method of recommendation results in the overview.txt. It fixes the potential issue of multi-domain selection mentioned in the issuehttps://github.com/bcb-unl/run_dbcan/issues/9#issue-2997076969.

- Python
Published by Xinpeng021001 about 1 year ago

https://github.com/bcb-unl/run_dbcan - v5.0.3

Fix the overview error mentioned in the issue. Now we follow the rule to generate recommended results: CAZy-sub > dbCAN_sub > dbCAN.

- Python
Published by Xinpeng021001 about 1 year ago

https://github.com/bcb-unl/run_dbcan - v5.0.2

Revise CGCFinder situation.

- Python
Published by Xinpeng021001 about 1 year ago

https://github.com/bcb-unl/run_dbcan - v5.0.0

Full Changelog: https://github.com/bcb-unl/rundbcannew/commits/v5.0.0

- Python
Published by Xinpeng021001 over 1 year ago