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https://github.com/beardymcjohnface/ficture

https://github.com/beardymcjohnface/ficture

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    codemeta.json file
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    Links to: biorxiv.org, zenodo.org
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    Scientific vocabulary similarity
    Low similarity (7.0%) to scientific vocabulary
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Fork of seqscope/ficture
Created about 2 years ago · Last pushed about 2 years ago

https://github.com/beardymcjohnface/ficture/blob/main/ 

__Fork contains quick fixes for our lab running with CosMX__

# FICTURE

FICTURE: Scalable segmentation-free analysis of sub-micron resolution spatial transcriptomics

[Preprint](https://biorxiv.org/cgi/content/short/2023.11.04.565621v2) (Real data results in the preprint are [available on Zenodo](https://zenodo.org/records/10070621))

[Slides used for AGBT talk](http://tinyurl.com/47pbktzp)


*This repository is under active construction*

Currently there are two main branches, the _stable_ branch is a version of FICTURE used in our internal pipeline; the _pypi_ branch is a version that is lagging behind the _stable_ branch but has all core functionalities and is available from pypi. In the near future we will merge these two branches and choose a consistent interface.

Documentation

[https://seqscope.github.io/ficture/](https://seqscope.github.io/ficture/)

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