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https://github.com/becksteinlab/vesicle_library

library of vesicles with the Dry Martini force field

https://github.com/becksteinlab/vesicle_library

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
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    .zenodo.json file
  • ✓
    DOI references
    Found 10 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
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    JOSS paper metadata
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    Scientific vocabulary similarity
    Low similarity (5.1%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

library of vesicles with the Dry Martini force field

Basic Info
  • Host: GitHub
  • Owner: Becksteinlab
  • Default Branch: master
  • Homepage:
  • Size: 52.4 MB
Statistics
  • Stars: 6
  • Watchers: 0
  • Forks: 1
  • Open Issues: 1
  • Releases: 0
Created almost 11 years ago · Last pushed about 10 years ago
Metadata Files
Readme

README.md

vesicle_library

Vesicles with the Dry Martini forcefield [1], constructed in varying sizes, ranging from 10 nm to 30 nm radius. Results are summarized in a technical report [2]. All data are made available under the CC-BY license.

A set of large vesicle systems, ranging in size from 1.75 M to 10 M particles are made available under doi:10.6084/m9.figshare.3406708.

  1. Clément Arnarez, Jaakko J. Uusitalo, Marcelo F. Masman, Helgi I. Ingólfsson, Djurre H. de Jong, Manuel N. Melo, Xavier Periole, Alex H. de Vries, and Siewert J. Marrink. Dry Martini, a Coarse-Grained Force Field for Lipid Membrane Simulations with Implicit Solvent. J. Chem. Theory Comput., 2015, 11 (1), pp 260–275. doi: 10.1021/ct500477k
  2. Kenney, Ian M.; Beckstein, Oliver (2015): Technical Report: SPIDAL Summer REU 2015: Biomolecular benchmark systems. figshare. doi: 10.6084/m9.figshare.1588804

Creative Commons License Vesicle Library by Ian M. Kenney, Oliver Beckstein is licensed under a Creative Commons Attribution 4.0 International License. Based on a work at https://github.com/Becksteinlab/vesicle_library.

Owner

  • Name: Becksteinlab
  • Login: Becksteinlab
  • Kind: organization
  • Email: obeckste@asu.edu
  • Location: Tempe, AZ

Computational Biophysics at Arizona State University

GitHub Events

Total
Last Year

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 5
  • Total Committers: 2
  • Avg Commits per committer: 2.5
  • Development Distribution Score (DDS): 0.4
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Oliver Beckstein o****t@g****m 3
Ian Kenney i****y@a****u 2
Committer Domains (Top 20 + Academic)
asu.edu: 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 2
  • Total pull requests: 0
  • Average time to close issues: almost 2 years
  • Average time to close pull requests: N/A
  • Total issue authors: 2
  • Total pull request authors: 0
  • Average comments per issue: 3.5
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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Top Authors
Issue Authors
  • dotsdl (1)
  • orbeckst (1)
Pull Request Authors
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