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Open Source Science

https://github.com/bede/flanker

Gene-flank analysis tool

https://github.com/bede/flanker

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.8%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Gene-flank analysis tool

Basic Info
  • Host: GitHub
  • Owner: bede
  • License: mit
  • Language: Python
  • Default Branch: main
  • Size: 7.52 MB
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 5 years ago · Last pushed over 4 years ago

https://github.com/bede/flanker/blob/main/ 

[![flanker](https://github.com/wtmatlock/flanker/blob/main/docs/frontpage.png)](https://flanker.readthedocs.io/en/latest/ "Read the Docs")

This repository accompanies the paper *Matlock W, Lipworth S, Constantinides B, Peto TEA, Walker AS, Crook D, Hopkins S, Shaw LP, Stoesser N.
                                       Flanker: a tool for comparative genomics of gene flanking regions.
                                       Microbial Genomics. 2021. doi: https://doi.org/10.1099/mgen.0.000634*
 
[![Anaconda-Server Badge](https://anaconda.org/bioconda/flanker/badges/downloads.svg)](https://anaconda.org/bioconda/flanker)
[![Anaconda-Server Badge](https://anaconda.org/bioconda/flanker/badges/latest_release_date.svg)](https://anaconda.org/bioconda/flanker)

# Documentation
[Read the Docs](https://flanker.readthedocs.io/en/latest/)

# Reproducibility
You can reproduce the analysis performed in our manuscript and the figures in the Binder environment below (click on the Binder badge, N.B. it is a bit slow to load - once the environment is loaded open the flanker.rmd file).

[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/samlipworth/Flanker-Reproducible-Example/main?urlpath=rstudio)

 # Tests
 ![Tests](https://github.com/wtmatlock/flanker/actions/workflows/test.yml/badge.svg)
 [![Documentation Status](https://readthedocs.org/projects/flanker/badge/?version=latest)](https://flanker.readthedocs.io/en/latest/?badge=latest)
 
 # License
 Flanker is available under the MIT License.
 
 [![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)

Owner

  • Name: Bede Constantinides
  • Login: bede
  • Kind: user
  • Company: Oxford Nanopore Technologies

GitHub Events

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Dependencies

.github/workflows/test.yml actions
  • actions/checkout v2 composite
  • s-weigand/setup-conda v1 composite
setup.py pypi
  • Levenshtein *
  • biopython *
  • networkx *
  • pandas *