nmt_uas_background_estimate

Aries Mira Pico Background Estimation MWE

https://github.com/jfdoolster/nmt_uas_background_estimate

Science Score: 44.0%

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Repository

Aries Mira Pico Background Estimation MWE

Basic Info

Host: GitHub
Owner: jfdoolster
License: gpl-3.0
Language: Jupyter Notebook
Default Branch: main
Homepage:
Size: 3.76 MB

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Watchers: 1
Forks: 0
Open Issues: 0
Releases: 1

Created over 2 years ago · Last pushed over 1 year ago

Metadata Files

Readme License Citation

README.md

Minimal working example of background correction routine used for NMT UAV-mounted Aires MIRA Pico.

Developed and tested with python 3.11

Usage:

```bash python main.py -f /path/to/csv

python main.py -f data/level0.csv ```

Output:

pandas dataframe with * original data timestamp ('Timestamp') * seconds into dataset ('seconds') * original data ('CH4' or 'C2H6') * n-point smoothed data ('smootheddata') * segmented and labeled smoothed data ('segmentdata' and 'segmentlabel') * gradient of smoothed data ('segmentgradient') * boolean mask from gradient filter ('gradientmask') * boolean mask from outlier (mean) filter ('outliermask'); final mask for background data * estimated background ('CH4background' or 'C2H6background') * background-adjusted data ('CH4adjusted' or 'C2H6adjusted')

Dependencies:

Python >3.9 with numpy, pandas, and matplotlib

Script requires csv files with datetime string ('Timestamp') and floating point ('CH4' or 'C2H6') data columns

Customization:

Individual datasets may require custom filter settings to improve background estimate. Initial filter settings defined in ./main.py inside the dset_info dictionary.

Timestamp and data column names can also be specified in dset_info for specific csv files.

Contact:

jonathan.dooley@student.nmt.edu

Owner

Name: J. F. Dooley
Login: jfdoolster
Kind: user

Repositories: 1
Profile: https://github.com/jfdoolster

Citation (CITATION.cff)

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: nmt_uas_background_estimate
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Jonathan F
    family-names: Dooley
    email: jonathan.dooley@student.nmt.edu
    affiliation: New Mexico Institute of Mining and Technology
repository-code: >-
  https://github.com/jfdoolster/nmt_uas_background_estimate.git
license: GPL-3.0
date-released: '2024-07-01'

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